Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SSUH2 (ssu-2 homolog (C. elegans))

Identity

Alias_namesC3orf32
chromosome 3 open reading frame 32
Alias_symbol (synonym)fls485
ssu-2
Other aliasSSU-2
HGNC (Hugo) SSUH2
LocusID (NCBI) 51066
Atlas_Id 47299
Location 3p25.3  [Link to chromosome band 3p25]
Location_base_pair Starts at 8619400 and ends at 8644798 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SSUH2   24809
Cards
Entrez_Gene (NCBI)SSUH2  51066  ssu-2 homolog (C. elegans)
AliasesC3orf32; SSU-2; fls485
GeneCards (Weizmann)SSUH2
Ensembl hg19 (Hinxton)ENSG00000125046 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000125046 [Gene_View]  chr3:8619400-8644798 [Contig_View]  SSUH2 [Vega]
ICGC DataPortalENSG00000125046
TCGA cBioPortalSSUH2
AceView (NCBI)SSUH2
Genatlas (Paris)SSUH2
WikiGenes51066
SOURCE (Princeton)SSUH2
Genetics Home Reference (NIH)SSUH2
Genomic and cartography
GoldenPath hg38 (UCSC)SSUH2  -     chr3:8619400-8644798 -  3p25.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SSUH2  -     3p25.3   [Description]    (hg19-Feb_2009)
EnsemblSSUH2 - 3p25.3 [CytoView hg19]  SSUH2 - 3p25.3 [CytoView hg38]
Mapping of homologs : NCBISSUH2 [Mapview hg19]  SSUH2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA622964 AB024705 AK057972 AK093025 AK093066
RefSeq transcript (Entrez)NM_001256748 NM_001256749 NM_015931
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SSUH2
Cluster EST : UnigeneHs.740735 [ NCBI ]
CGAP (NCI)Hs.740735
Alternative Splicing GalleryENSG00000125046
Gene ExpressionSSUH2 [ NCBI-GEO ]   SSUH2 [ EBI - ARRAY_EXPRESS ]   SSUH2 [ SEEK ]   SSUH2 [ MEM ]
Gene Expression Viewer (FireBrowse)SSUH2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51066
GTEX Portal (Tissue expression)SSUH2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y2M2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y2M2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y2M2
Splice isoforms : SwissVarQ9Y2M2
PhosPhoSitePlusQ9Y2M2
Domains : Interpro (EBI)SSUH2   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SSUH2
DMDM Disease mutations51066
Blocks (Seattle)SSUH2
SuperfamilyQ9Y2M2
Human Protein AtlasENSG00000125046
Peptide AtlasQ9Y2M2
HPRD11267
IPIIPI00006376   IPI00793704   IPI00925896   IPI00925182   IPI00925399   IPI00794203   IPI00797234   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y2M2
IntAct (EBI)Q9Y2M2
FunCoupENSG00000125046
BioGRIDSSUH2
STRING (EMBL)SSUH2
ZODIACSSUH2
Ontologies - Pathways
QuickGOQ9Y2M2
Ontology : AmiGOnucleus  cytoplasm  odontogenesis  
Ontology : EGO-EBInucleus  cytoplasm  odontogenesis  
NDEx NetworkSSUH2
Atlas of Cancer Signalling NetworkSSUH2
Wikipedia pathwaysSSUH2
Orthology - Evolution
OrthoDB51066
GeneTree (enSembl)ENSG00000125046
Phylogenetic Trees/Animal Genes : TreeFamSSUH2
HOVERGENQ9Y2M2
HOGENOMQ9Y2M2
Homologs : HomoloGeneSSUH2
Homology/Alignments : Family Browser (UCSC)SSUH2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSSUH2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SSUH2
dbVarSSUH2
ClinVarSSUH2
1000_GenomesSSUH2 
Exome Variant ServerSSUH2
ExAC (Exome Aggregation Consortium)SSUH2 (select the gene name)
Genetic variants : HAPMAP51066
Genomic Variants (DGV)SSUH2 [DGVbeta]
DECIPHERSSUH2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSSUH2 
Mutations
ICGC Data PortalSSUH2 
TCGA Data PortalSSUH2 
Broad Tumor PortalSSUH2
OASIS PortalSSUH2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSSUH2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSSUH2
BioMutasearch SSUH2
DgiDB (Drug Gene Interaction Database)SSUH2
DoCM (Curated mutations)SSUH2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SSUH2 (select a term)
intoGenSSUH2
Cancer3DSSUH2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSSUH2
Genetic Testing Registry SSUH2
NextProtQ9Y2M2 [Medical]
TSGene51066
GENETestsSSUH2
Target ValidationSSUH2
Huge Navigator SSUH2 [HugePedia]
snp3D : Map Gene to Disease51066
BioCentury BCIQSSUH2
ClinGenSSUH2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51066
Chemical/Pharm GKB GenePA142672393
Clinical trialSSUH2
Miscellaneous
canSAR (ICR)SSUH2 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSSUH2
EVEXSSUH2
GoPubMedSSUH2
iHOPSSUH2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 12:57:34 CEST 2017

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