Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SSX2B (SSX family member 2B)

Identity

Alias_namesmember 2b
Alias_symbol (synonym)CT5.2b
Other aliasCT5.2
HOM-MEL-40
SSX
HGNC (Hugo) SSX2B
LocusID (NCBI) 727837
Atlas_Id 47686
Location Xp11.22  [Link to chromosome band Xp11]
Location_base_pair Starts at 52696896 and ends at 52707226 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
SS18 (18q11.2) / SSX2B (Xp11.22)SSX2B (Xp11.22) / SYT1 (12q21.2)SYT1 (12q21.2) / SSX2B (Xp11.22)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SSX2B   22263
Cards
Entrez_Gene (NCBI)SSX2B  727837  SSX family member 2B
AliasesCT5.2; CT5.2b; HOM-MEL-40; SSX
GeneCards (Weizmann)SSX2B
Ensembl hg19 (Hinxton)ENSG00000268447 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000268447 [Gene_View]  ENSG00000268447 [Sequence]  chrX:52696896-52707226 [Contig_View]  SSX2B [Vega]
ICGC DataPortalENSG00000268447
TCGA cBioPortalSSX2B
AceView (NCBI)SSX2B
Genatlas (Paris)SSX2B
WikiGenes727837
SOURCE (Princeton)SSX2B
Genetics Home Reference (NIH)SSX2B
Genomic and cartography
GoldenPath hg38 (UCSC)SSX2B  -     chrX:52696896-52707226 -  Xp11.22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SSX2B  -     Xp11.22   [Description]    (hg19-Feb_2009)
EnsemblSSX2B - Xp11.22 [CytoView hg19]  SSX2B - Xp11.22 [CytoView hg38]
Mapping of homologs : NCBISSX2B [Mapview hg19]  SSX2B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF190791 BC002818 BC007343 BC016957 BC069313
RefSeq transcript (Entrez)NM_001164417 NM_001278701 NM_001278702
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SSX2B
Cluster EST : UnigeneHs.661107 [ NCBI ]
CGAP (NCI)Hs.661107
Alternative Splicing GalleryENSG00000268447
Gene ExpressionSSX2B [ NCBI-GEO ]   SSX2B [ EBI - ARRAY_EXPRESS ]   SSX2B [ SEEK ]   SSX2B [ MEM ]
Gene Expression Viewer (FireBrowse)SSX2B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)727837
GTEX Portal (Tissue expression)SSX2B
Human Protein AtlasENSG00000268447-SSX2B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ16385   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ16385  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ16385
Splice isoforms : SwissVarQ16385
PhosPhoSitePlusQ16385
Domaine pattern : Prosite (Expaxy)KRAB_RELATED (PS50806)   
Domains : Interpro (EBI)KRAB    KRAB_dom_sf    Krueppel-associated_box-rel    SSX    SSXRD_motif   
Domain families : Pfam (Sanger)KRAB (PF01352)    SSXRD (PF09514)   
Domain families : Pfam (NCBI)pfam01352    pfam09514   
Domain families : Smart (EMBL)KRAB (SM00349)  
Conserved Domain (NCBI)SSX2B
DMDM Disease mutations727837
Blocks (Seattle)SSX2B
SuperfamilyQ16385
Human Protein Atlas [tissue]ENSG00000268447-SSX2B [tissue]
Peptide AtlasQ16385
Protein Interaction databases
DIP (DOE-UCLA)Q16385
IntAct (EBI)Q16385
FunCoupENSG00000268447
BioGRIDSSX2B
STRING (EMBL)SSX2B
ZODIACSSX2B
Ontologies - Pathways
QuickGOQ16385
Ontology : AmiGOnucleic acid binding  protein binding  nucleus  nucleus  regulation of transcription, DNA-templated  
Ontology : EGO-EBInucleic acid binding  protein binding  nucleus  nucleus  regulation of transcription, DNA-templated  
Pathways : KEGGTranscriptional misregulation in cancer   
NDEx NetworkSSX2B
Atlas of Cancer Signalling NetworkSSX2B
Wikipedia pathwaysSSX2B
Orthology - Evolution
OrthoDB727837
GeneTree (enSembl)ENSG00000268447
Phylogenetic Trees/Animal Genes : TreeFamSSX2B
HOVERGENQ16385
HOGENOMQ16385
Homologs : HomoloGeneSSX2B
Homology/Alignments : Family Browser (UCSC)SSX2B
Gene fusions - Rearrangements
Fusion : MitelmanSS18/SSX2B [18q11.2/Xp11.22]  [t(X;18)(p11;q11)]  
Fusion : QuiverSSX2B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSSX2B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SSX2B
dbVarSSX2B
ClinVarSSX2B
1000_GenomesSSX2B 
Exome Variant ServerSSX2B
ExAC (Exome Aggregation Consortium)ENSG00000268447
GNOMAD BrowserENSG00000268447
Varsome BrowserSSX2B
Genetic variants : HAPMAP727837
Genomic Variants (DGV)SSX2B [DGVbeta]
DECIPHERSSX2B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSSX2B 
Mutations
ICGC Data PortalSSX2B 
TCGA Data PortalSSX2B 
Broad Tumor PortalSSX2B
OASIS PortalSSX2B [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSSX2B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SSX2B
DgiDB (Drug Gene Interaction Database)SSX2B
DoCM (Curated mutations)SSX2B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SSX2B (select a term)
intoGenSSX2B
Cancer3DSSX2B(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETSSX2B
MedgenSSX2B
Genetic Testing Registry SSX2B
NextProtQ16385 [Medical]
TSGene727837
GENETestsSSX2B
Target ValidationSSX2B
Huge Navigator SSX2B [HugePedia]
snp3D : Map Gene to Disease727837
BioCentury BCIQSSX2B
ClinGenSSX2B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD727837
Chemical/Pharm GKB GenePA162404839
Clinical trialSSX2B
Miscellaneous
canSAR (ICR)SSX2B (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSSX2B
EVEXSSX2B
GoPubMedSSX2B
iHOPSSX2B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 6 11:42:09 CET 2018

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