Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SSX3 (SSX family member 3)

Identity

Alias_namessynovial sarcoma
Alias_symbol (synonym)CT5.3
Other alias
HGNC (Hugo) SSX3
LocusID (NCBI) 10214
Atlas_Id 42408
Location Xp11.23  [Link to chromosome band Xp11]
Location_base_pair Starts at 48346428 and ends at 48356753 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  Testis: Spermatocytic seminoma


External links

Nomenclature
HGNC (Hugo)SSX3   11337
Cards
Entrez_Gene (NCBI)SSX3  10214  SSX family member 3
AliasesCT5.3
GeneCards (Weizmann)SSX3
Ensembl hg19 (Hinxton)ENSG00000165584 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000165584 [Gene_View]  ENSG00000165584 [Sequence]  chrX:48346428-48356753 [Contig_View]  SSX3 [Vega]
ICGC DataPortalENSG00000165584
TCGA cBioPortalSSX3
AceView (NCBI)SSX3
Genatlas (Paris)SSX3
WikiGenes10214
SOURCE (Princeton)SSX3
Genetics Home Reference (NIH)SSX3
Genomic and cartography
GoldenPath hg38 (UCSC)SSX3  -     chrX:48346428-48356753 -  Xp11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SSX3  -     Xp11.23   [Description]    (hg19-Feb_2009)
EnsemblSSX3 - Xp11.23 [CytoView hg19]  SSX3 - Xp11.23 [CytoView hg38]
Mapping of homologs : NCBISSX3 [Mapview hg19]  SSX3 [Mapview hg38]
OMIM300325   
Gene and transcription
Genbank (Entrez)AA609599 AK310348 AK310513 BC005904 BC103862
RefSeq transcript (Entrez)NM_021014 NM_175711
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SSX3
Cluster EST : UnigeneHs.558445 [ NCBI ]
CGAP (NCI)Hs.558445
Alternative Splicing GalleryENSG00000165584
Gene ExpressionSSX3 [ NCBI-GEO ]   SSX3 [ EBI - ARRAY_EXPRESS ]   SSX3 [ SEEK ]   SSX3 [ MEM ]
Gene Expression Viewer (FireBrowse)SSX3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10214
GTEX Portal (Tissue expression)SSX3
Human Protein AtlasENSG00000165584-SSX3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ99909   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ99909  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ99909
Splice isoforms : SwissVarQ99909
PhosPhoSitePlusQ99909
Domaine pattern : Prosite (Expaxy)KRAB_RELATED (PS50806)   
Domains : Interpro (EBI)KRAB    Krueppel-associated_box-rel    SSX    SSXRD_motif   
Domain families : Pfam (Sanger)SSXRD (PF09514)   
Domain families : Pfam (NCBI)pfam09514   
Domain families : Smart (EMBL)KRAB (SM00349)  
Conserved Domain (NCBI)SSX3
DMDM Disease mutations10214
Blocks (Seattle)SSX3
SuperfamilyQ99909
Human Protein Atlas [tissue]ENSG00000165584-SSX3 [tissue]
Peptide AtlasQ99909
HPRD02265
IPIIPI00294440   IPI00029308   IPI00640663   
Protein Interaction databases
DIP (DOE-UCLA)Q99909
IntAct (EBI)Q99909
FunCoupENSG00000165584
BioGRIDSSX3
STRING (EMBL)SSX3
ZODIACSSX3
Ontologies - Pathways
QuickGOQ99909
Ontology : AmiGOnucleic acid binding  transcription corepressor activity  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  negative regulation of nucleic acid-templated transcription  
Ontology : EGO-EBInucleic acid binding  transcription corepressor activity  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  negative regulation of nucleic acid-templated transcription  
NDEx NetworkSSX3
Atlas of Cancer Signalling NetworkSSX3
Wikipedia pathwaysSSX3
Orthology - Evolution
OrthoDB10214
GeneTree (enSembl)ENSG00000165584
Phylogenetic Trees/Animal Genes : TreeFamSSX3
HOVERGENQ99909
HOGENOMQ99909
Homologs : HomoloGeneSSX3
Homology/Alignments : Family Browser (UCSC)SSX3
Gene fusions - Rearrangements
Fusion : QuiverSSX3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSSX3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SSX3
dbVarSSX3
ClinVarSSX3
1000_GenomesSSX3 
Exome Variant ServerSSX3
ExAC (Exome Aggregation Consortium)ENSG00000165584
GNOMAD BrowserENSG00000165584
Genetic variants : HAPMAP10214
Genomic Variants (DGV)SSX3 [DGVbeta]
DECIPHERSSX3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSSX3 
Mutations
ICGC Data PortalSSX3 
TCGA Data PortalSSX3 
Broad Tumor PortalSSX3
OASIS PortalSSX3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSSX3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSSX3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch SSX3
DgiDB (Drug Gene Interaction Database)SSX3
DoCM (Curated mutations)SSX3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SSX3 (select a term)
intoGenSSX3
Cancer3DSSX3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300325   
Orphanet
DisGeNETSSX3
MedgenSSX3
Genetic Testing Registry SSX3
NextProtQ99909 [Medical]
TSGene10214
GENETestsSSX3
Target ValidationSSX3
Huge Navigator SSX3 [HugePedia]
snp3D : Map Gene to Disease10214
BioCentury BCIQSSX3
ClinGenSSX3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10214
Chemical/Pharm GKB GenePA36161
Clinical trialSSX3
Miscellaneous
canSAR (ICR)SSX3 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSSX3
EVEXSSX3
GoPubMedSSX3
iHOPSSX3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri Jun 22 16:51:57 CEST 2018

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