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SSX5 (SSX family member 5)

Identity

Alias (NCBI)-
HGNC (Hugo) SSX5
HGNC Previous namesynovial sarcoma, X breakpoint 5
LocusID (NCBI) 6758
Atlas_Id 42410
Location Xp11.23  [Link to chromosome band Xp11]
Location_base_pair Starts at 48186220 and ends at 48196763 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)SSX5   11339
Cards
Entrez_Gene (NCBI)SSX5  6758  SSX family member 5
Aliases
GeneCards (Weizmann)SSX5
Ensembl hg19 (Hinxton)ENSG00000165583 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000165583 [Gene_View]  ENSG00000165583 [Sequence]  chrX:48186220-48196763 [Contig_View]  SSX5 [Vega]
ICGC DataPortalENSG00000165583
TCGA cBioPortalSSX5
AceView (NCBI)SSX5
Genatlas (Paris)SSX5
WikiGenes6758
SOURCE (Princeton)SSX5
Genetics Home Reference (NIH)SSX5
Genomic and cartography
GoldenPath hg38 (UCSC)SSX5  -     chrX:48186220-48196763 -  Xp11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SSX5  -     Xp11.23   [Description]    (hg19-Feb_2009)
GoldenPathSSX5 - Xp11.23 [CytoView hg19]  SSX5 - Xp11.23 [CytoView hg38]
ImmunoBaseENSG00000165583
genome Data Viewer NCBISSX5 [Mapview hg19]  
OMIM300327   
Gene and transcription
Genbank (Entrez)BC016640 BE896093 U90842
RefSeq transcript (Entrez)NM_021015 NM_175723
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SSX5
Alternative Splicing GalleryENSG00000165583
Gene ExpressionSSX5 [ NCBI-GEO ]   SSX5 [ EBI - ARRAY_EXPRESS ]   SSX5 [ SEEK ]   SSX5 [ MEM ]
Gene Expression Viewer (FireBrowse)SSX5 [ Firebrowse - Broad ]
GenevisibleExpression of SSX5 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6758
GTEX Portal (Tissue expression)SSX5
Human Protein AtlasENSG00000165583-SSX5 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO60225   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO60225  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO60225
Splice isoforms : SwissVarO60225
PhosPhoSitePlusO60225
Domaine pattern : Prosite (Expaxy)KRAB_RELATED (PS50806)   
Domains : Interpro (EBI)KRAB    KRAB_dom_sf    Krueppel-associated_box-rel    SSX    SSXRD_motif   
Domain families : Pfam (Sanger)SSXRD (PF09514)   
Domain families : Pfam (NCBI)pfam09514   
Domain families : Smart (EMBL)KRAB (SM00349)  
Conserved Domain (NCBI)SSX5
DMDM Disease mutations6758
Blocks (Seattle)SSX5
SuperfamilyO60225
Human Protein Atlas [tissue]ENSG00000165583-SSX5 [tissue]
Peptide AtlasO60225
HPRD02267
IPIIPI00028378   IPI00220969   IPI00552340   
Protein Interaction databases
DIP (DOE-UCLA)O60225
IntAct (EBI)O60225
FunCoupENSG00000165583
BioGRIDSSX5
STRING (EMBL)SSX5
ZODIACSSX5
Ontologies - Pathways
QuickGOO60225
Ontology : AmiGOnucleic acid binding  protein binding  nucleus  regulation of transcription, DNA-templated  
Ontology : EGO-EBInucleic acid binding  protein binding  nucleus  regulation of transcription, DNA-templated  
NDEx NetworkSSX5
Atlas of Cancer Signalling NetworkSSX5
Wikipedia pathwaysSSX5
Orthology - Evolution
OrthoDB6758
GeneTree (enSembl)ENSG00000165583
Phylogenetic Trees/Animal Genes : TreeFamSSX5
HOGENOMO60225
Homologs : HomoloGeneSSX5
Homology/Alignments : Family Browser (UCSC)SSX5
Gene fusions - Rearrangements
Fusion : QuiverSSX5
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSSX5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SSX5
dbVarSSX5
ClinVarSSX5
MonarchSSX5
1000_GenomesSSX5 
Exome Variant ServerSSX5
GNOMAD BrowserENSG00000165583
Varsome BrowserSSX5
Genetic variants : HAPMAP6758
Genomic Variants (DGV)SSX5 [DGVbeta]
DECIPHERSSX5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSSX5 
Mutations
ICGC Data PortalSSX5 
TCGA Data PortalSSX5 
Broad Tumor PortalSSX5
OASIS PortalSSX5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSSX5  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSSX5
Mutations and Diseases : HGMDSSX5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch SSX5
DgiDB (Drug Gene Interaction Database)SSX5
DoCM (Curated mutations)SSX5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SSX5 (select a term)
intoGenSSX5
Cancer3DSSX5(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300327   
Orphanet
DisGeNETSSX5
MedgenSSX5
Genetic Testing Registry SSX5
NextProtO60225 [Medical]
TSGene6758
GENETestsSSX5
Target ValidationSSX5
Huge Navigator SSX5 [HugePedia]
snp3D : Map Gene to Disease6758
BioCentury BCIQSSX5
ClinGenSSX5
Clinical trials, drugs, therapy
Protein Interactions : CTD6758
Pharm GKB GenePA36163
Clinical trialSSX5
Miscellaneous
canSAR (ICR)SSX5 (select the gene name)
HarmonizomeSSX5
DataMed IndexSSX5
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSSX5
EVEXSSX5
GoPubMedSSX5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 14 14:34:28 CEST 2020

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