Atlas of Genetics and Cytogenetics in Oncology and Haematology

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Taking over the Atlas
Dear Colleagues,
The Atlas, once more, is in great danger, and I will have to proceed to a collective economic lay-off of all the team involved in the Atlas before the begining of April 2015 (a foundation having suddenly withdrawn its commitment to support the Atlas). I ask you herein if any Scientific Society (a Society of Cytogenetics, of Clinical Genetics, of Hematology, or a Cancer Society, or any other...), any University and/or Hospital, any Charity, or any database would be interested in taking over the Atlas, in whole or in part. If taking charge of the whole lot is too big, a consortium of various actors could be the solution (I am myself trying to find partners). Could you please spread the information, contact the relevant authorities, and find partners.
Survival of the Atlas will be critically dependant upon your ability to find solutions (and urgently!).
Kind regards.
Jean-Loup Huret
Donations are also welcome
If each casual visitor gives 3 Euros or Dollars, the Atlas is saved in a week !
If each professional gives 100 Euros or Dollars once a year (now), the Atlas is saved in 2 weeks !
Don't let the Atlas imminent demise
Note: we send fiscal receipts for donations equal or above 50 Euros or Dollars

Donate (in Euros)

Donate (in US Dollars)

SSX6 (synovial sarcoma, X breakpoint 6 (pseudogene))


Other namesSSXP2
HGNC (Hugo) SSX6
LocusID (NCBI) 280657
Location Xp11.23
Location_base_pair Starts at 47967377 and ends at 47973694 bp from pter ( according to hg19-Feb_2009)

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute



External links

HGNC (Hugo)SSX6   19652
Entrez_Gene (NCBI)SSX6  280657  synovial sarcoma, X breakpoint 6 (pseudogene)
GeneCards (Weizmann)SSX6
Ensembl hg19 (Hinxton) [Gene_View]  chrX:47967377-47973694 [Contig_View]  SSX6 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chrX:47967377-47973694 [Contig_View]  SSX6 [Vega]
AceView (NCBI)SSX6
Genatlas (Paris)SSX6
SOURCE (Princeton)SSX6
Genomic and cartography
GoldenPath hg19 (UCSC)SSX6  -     chrX:47967377-47973694 +  Xp11.23   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SSX6  -     Xp11.23   [Description]    (hg38-Dec_2013)
EnsemblSSX6 - Xp11.23 [CytoView hg19]  SSX6 - Xp11.23 [CytoView hg38]
Mapping of homologs : NCBISSX6 [Mapview hg19]  SSX6 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK302765 BC148532 BC153125 BK000686
RefSeq transcript (Entrez)NM_173357
RefSeq genomic (Entrez)NC_000023 NC_018934 NG_002582 NT_079573 NW_004929439
Consensus coding sequences : CCDS (NCBI)SSX6
Cluster EST : UnigeneHs.511998 [ NCBI ]
CGAP (NCI)Hs.511998
Alternative Splicing : Fast-db (Paris)GSHG0031505
Gene ExpressionSSX6 [ NCBI-GEO ]     SSX6 [ SEEK ]   SSX6 [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7RTT6 (Uniprot)
NextProtQ7RTT6  [Medical]
With graphics : InterProQ7RTT6
Splice isoforms : SwissVarQ7RTT6 (Swissvar)
Domaine pattern : Prosite (Expaxy)KRAB_RELATED (PS50806)   
Domains : Interpro (EBI)Krueppel-associated_box    Krueppel-associated_box-rel    SSX    SSXRD_motif   
Related proteins : CluSTrQ7RTT6
Domain families : Pfam (Sanger)SSXRD (PF09514)   
Domain families : Pfam (NCBI)pfam09514   
Domain families : Smart (EMBL)KRAB (SM00349)  
DMDM Disease mutations280657
Blocks (Seattle)Q7RTT6
Peptide AtlasQ7RTT6
IPIIPI00175923   IPI00979084   IPI00964093   
Protein Interaction databases
IntAct (EBI)Q7RTT6
Ontologies - Pathways
Ontology : AmiGOnucleic acid binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  
Ontology : EGO-EBInucleic acid binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  
Protein Interaction DatabaseSSX6
DoCM (Curated mutations)SSX6
Wikipedia pathwaysSSX6
Gene fusion - rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerSSX6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SSX6
Exome Variant ServerSSX6
SNP (GeneSNP Utah)SSX6
Genetic variants : HAPMAPSSX6
Genomic Variants (DGV)SSX6 [DGVbeta]
Somatic Mutations in Cancer : COSMICSSX6 
CONAN: Copy Number AnalysisSSX6 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
DECIPHER (Syndromes)X:47967377-47973694
Mutations and Diseases : HGMDSSX6
NextProtQ7RTT6 [Medical]
Disease Genetic AssociationSSX6
Huge Navigator SSX6 [HugePedia]  SSX6 [HugeCancerGEM]
snp3D : Map Gene to Disease280657
DGIdb (Drug Gene Interaction db)SSX6
General knowledge
Homologs : HomoloGeneSSX6
Homology/Alignments : Family Browser (UCSC)SSX6
Phylogenetic Trees/Animal Genes : TreeFamSSX6
Chemical/Protein Interactions : CTD280657
Chemical/Pharm GKB GenePA134968874
Clinical trialSSX6
Other databases
PubMed5 Pubmed reference(s) in Entrez
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI


Written09-2002Dessen P, Le Minor S
Updated02-2015Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Mar 28 17:31:00 CET 2015

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