Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SSX6 (synovial sarcoma, X breakpoint 6 (pseudogene))

Identity

Other namesSSXP2
dJ54B20.1
psiSSX2
HGNC (Hugo) SSX6
LocusID (NCBI) 280657
Location Xp11.23
Location_base_pair Starts at 47967377 and ends at 47973694 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)SSX6   19652
Cards
Entrez_Gene (NCBI)SSX6  280657  synovial sarcoma, X breakpoint 6 (pseudogene)
GeneCards (Weizmann)SSX6
Ensembl (Hinxton)ENSG00000171483 [Gene_View]  chrX:47967377-47973694 [Contig_View]  SSX6 [Vega]
ICGC DataPortalENSG00000171483
cBioPortalSSX6
AceView (NCBI)SSX6
Genatlas (Paris)SSX6
WikiGenes280657
SOURCE (Princeton)NM_173357
Genomic and cartography
GoldenPath (UCSC)SSX6  -  Xp11.23   chrX:47967377-47973694 +  Xp11.23   [Description]    (hg19-Feb_2009)
EnsemblSSX6 - Xp11.23 [CytoView]
Mapping of homologs : NCBISSX6 [Mapview]
OMIM300541   
Gene and transcription
Genbank (Entrez)AK302765 BC148532 BC153125 BK000686
RefSeq transcript (Entrez)NM_173357
RefSeq genomic (Entrez)AC_000155 NC_000023 NC_018934 NG_002582 NT_079573 NW_001842362 NW_004929439
Consensus coding sequences : CCDS (NCBI)SSX6
Cluster EST : UnigeneHs.511998 [ NCBI ]
CGAP (NCI)Hs.511998
Alternative Splicing : Fast-db (Paris)GSHG0031505
Alternative Splicing GalleryENSG00000171483
Gene ExpressionSSX6 [ NCBI-GEO ]     SSX6 [ SEEK ]   SSX6 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7RTT6 (Uniprot)
NextProtQ7RTT6  [Medical]
With graphics : InterProQ7RTT6
Splice isoforms : SwissVarQ7RTT6 (Swissvar)
Domaine pattern : Prosite (Expaxy)KRAB_RELATED (PS50806)   
Domains : Interpro (EBI)Krueppel-associated_box [organisation]   Krueppel-associated_box-rel [organisation]   SSX [organisation]   SSXRD_motif [organisation]  
Related proteins : CluSTrQ7RTT6
Domain families : Pfam (Sanger)SSXRD (PF09514)   
Domain families : Pfam (NCBI)pfam09514   
Domain families : Smart (EMBL)KRAB (SM00349)  
DMDM Disease mutations280657
Blocks (Seattle)Q7RTT6
Human Protein AtlasENSG00000171483 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasQ7RTT6
HPRD18109
IPIIPI00175923   IPI00979084   IPI00964093   
Protein Interaction databases
DIP (DOE-UCLA)Q7RTT6
IntAct (EBI)Q7RTT6
FunCoupENSG00000171483
BioGRIDSSX6
InParanoidQ7RTT6
Interologous Interaction database Q7RTT6
IntegromeDBSSX6
STRING (EMBL)SSX6
Ontologies - Pathways
Ontology : AmiGOnucleic acid binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  
Ontology : EGO-EBInucleic acid binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  
Protein Interaction DatabaseSSX6
Wikipedia pathwaysSSX6
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)SSX6
snp3D : Map Gene to Disease280657
SNP (GeneSNP Utah)SSX6
SNP : HGBaseSSX6
Genetic variants : HAPMAPSSX6
Exome VariantSSX6
1000_GenomesSSX6 
ICGC programENSG00000171483 
Somatic Mutations in Cancer : COSMICSSX6 
CONAN: Copy Number AnalysisSSX6 
Mutations and Diseases : HGMDSSX6
Genomic VariantsSSX6  SSX6 [DGVbeta]
dbVarSSX6
ClinVarSSX6
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM300541   
MedgenSSX6
GENETestsSSX6
Disease Genetic AssociationSSX6
Huge Navigator SSX6 [HugePedia]  SSX6 [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneSSX6
Homology/Alignments : Family Browser (UCSC)SSX6
Phylogenetic Trees/Animal Genes : TreeFamSSX6
Chemical/Protein Interactions : CTD280657
Chemical/Pharm GKB GenePA134968874
Clinical trialSSX6
Cancer Resource (Charite)ENSG00000171483
Other databases
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
CoreMineSSX6
iHOPSSX6
OncoSearchSSX6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jul 30 14:17:16 CEST 2014

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