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SSX7 (SSX family member 7)

Identity

Alias_namessynovial sarcoma
Other alias-
HGNC (Hugo) SSX7
LocusID (NCBI) 280658
Atlas_Id 42412
Location Xp11.22  [Link to chromosome band Xp11]
Location_base_pair Starts at 52644061 and ends at 52654900 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
SS18 (18q11.2) / SSX7 (Xp11.22)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SSX7   19653
Cards
Entrez_Gene (NCBI)SSX7  280658  SSX family member 7
Aliases
GeneCards (Weizmann)SSX7
Ensembl hg19 (Hinxton)ENSG00000187754 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000187754 [Gene_View]  chrX:52644061-52654900 [Contig_View]  SSX7 [Vega]
ICGC DataPortalENSG00000187754
TCGA cBioPortalSSX7
AceView (NCBI)SSX7
Genatlas (Paris)SSX7
WikiGenes280658
SOURCE (Princeton)SSX7
Genetics Home Reference (NIH)SSX7
Genomic and cartography
GoldenPath hg38 (UCSC)SSX7  -     chrX:52644061-52654900 -  Xp11.22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SSX7  -     Xp11.22   [Description]    (hg19-Feb_2009)
EnsemblSSX7 - Xp11.22 [CytoView hg19]  SSX7 - Xp11.22 [CytoView hg38]
Mapping of homologs : NCBISSX7 [Mapview hg19]  SSX7 [Mapview hg38]
OMIM300542   
Gene and transcription
Genbank (Entrez)BC140462 BK000687
RefSeq transcript (Entrez)NM_173358
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SSX7
Cluster EST : UnigeneHs.558712 [ NCBI ]
CGAP (NCI)Hs.558712
Alternative Splicing GalleryENSG00000187754
Gene ExpressionSSX7 [ NCBI-GEO ]   SSX7 [ EBI - ARRAY_EXPRESS ]   SSX7 [ SEEK ]   SSX7 [ MEM ]
Gene Expression Viewer (FireBrowse)SSX7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)280658
GTEX Portal (Tissue expression)SSX7
Human Protein AtlasENSG00000187754-SSX7 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7RTT5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7RTT5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7RTT5
Splice isoforms : SwissVarQ7RTT5
PhosPhoSitePlusQ7RTT5
Domaine pattern : Prosite (Expaxy)KRAB_RELATED (PS50806)   
Domains : Interpro (EBI)KRAB    Krueppel-associated_box-rel    SSX    SSXRD_motif   
Domain families : Pfam (Sanger)SSXRD (PF09514)   
Domain families : Pfam (NCBI)pfam09514   
Domain families : Smart (EMBL)KRAB (SM00349)  
Conserved Domain (NCBI)SSX7
DMDM Disease mutations280658
Blocks (Seattle)SSX7
SuperfamilyQ7RTT5
Human Protein Atlas [tissue]ENSG00000187754-SSX7 [tissue]
Peptide AtlasQ7RTT5
HPRD06727
IPIIPI00175924   
Protein Interaction databases
DIP (DOE-UCLA)Q7RTT5
IntAct (EBI)Q7RTT5
FunCoupENSG00000187754
BioGRIDSSX7
STRING (EMBL)SSX7
ZODIACSSX7
Ontologies - Pathways
QuickGOQ7RTT5
Ontology : AmiGOnucleic acid binding  transcription corepressor activity  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  negative regulation of nucleic acid-templated transcription  
Ontology : EGO-EBInucleic acid binding  transcription corepressor activity  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  negative regulation of nucleic acid-templated transcription  
NDEx NetworkSSX7
Atlas of Cancer Signalling NetworkSSX7
Wikipedia pathwaysSSX7
Orthology - Evolution
OrthoDB280658
GeneTree (enSembl)ENSG00000187754
Phylogenetic Trees/Animal Genes : TreeFamSSX7
HOVERGENQ7RTT5
HOGENOMQ7RTT5
Homologs : HomoloGeneSSX7
Homology/Alignments : Family Browser (UCSC)SSX7
Gene fusions - Rearrangements
Tumor Fusion PortalSSX7
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSSX7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SSX7
dbVarSSX7
ClinVarSSX7
1000_GenomesSSX7 
Exome Variant ServerSSX7
ExAC (Exome Aggregation Consortium)ENSG00000187754
GNOMAD BrowserENSG00000187754
Genetic variants : HAPMAP280658
Genomic Variants (DGV)SSX7 [DGVbeta]
DECIPHERSSX7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSSX7 
Mutations
ICGC Data PortalSSX7 
TCGA Data PortalSSX7 
Broad Tumor PortalSSX7
OASIS PortalSSX7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSSX7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSSX7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SSX7
DgiDB (Drug Gene Interaction Database)SSX7
DoCM (Curated mutations)SSX7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SSX7 (select a term)
intoGenSSX7
Cancer3DSSX7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300542   
Orphanet
DisGeNETSSX7
MedgenSSX7
Genetic Testing Registry SSX7
NextProtQ7RTT5 [Medical]
TSGene280658
GENETestsSSX7
Target ValidationSSX7
Huge Navigator SSX7 [HugePedia]
snp3D : Map Gene to Disease280658
BioCentury BCIQSSX7
ClinGenSSX7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD280658
Chemical/Pharm GKB GenePA134879420
Clinical trialSSX7
Miscellaneous
canSAR (ICR)SSX7 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSSX7
EVEXSSX7
GoPubMedSSX7
iHOPSSX7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:36:42 CET 2017

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