Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SSX8 (SSX family member 8, pseudogene)

Identity

Alias_namessynovial sarcoma
Other alias-
HGNC (Hugo) SSX8
LocusID (NCBI) 280659
Atlas_Id 42413
Location Xp11.22  [Link to chromosome band Xp11]
Location_base_pair Starts at 52622935 and ends at 52630408 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SSX8   19654
Cards
Entrez_Gene (NCBI)SSX8  280659  SSX family member 8, pseudogene
Aliases
GeneCards (Weizmann)SSX8
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chrX:52622935-52630408 [Contig_View]  SSX8 [Vega]
TCGA cBioPortalSSX8
AceView (NCBI)SSX8
Genatlas (Paris)SSX8
WikiGenes280659
SOURCE (Princeton)SSX8
Genetics Home Reference (NIH)SSX8
Genomic and cartography
GoldenPath hg38 (UCSC)SSX8  -     chrX:52622935-52630408 +  Xp11.22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SSX8  -     Xp11.22   [Description]    (hg19-Feb_2009)
EnsemblSSX8 - Xp11.22 [CytoView hg19]  SSX8 - Xp11.22 [CytoView hg38]
Mapping of homologs : NCBISSX8 [Mapview hg19]  SSX8 [Mapview hg38]
OMIM300543   
Gene and transcription
Genbank (Entrez)AK302291 BK000688 DC399111
RefSeq transcript (Entrez)NM_174961
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SSX8
Cluster EST : UnigeneHs.694472 [ NCBI ]
CGAP (NCI)Hs.694472
Gene ExpressionSSX8 [ NCBI-GEO ]   SSX8 [ EBI - ARRAY_EXPRESS ]   SSX8 [ SEEK ]   SSX8 [ MEM ]
Gene Expression Viewer (FireBrowse)SSX8 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)280659
GTEX Portal (Tissue expression)SSX8
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7RTT4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7RTT4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7RTT4
Splice isoforms : SwissVarQ7RTT4
PhosPhoSitePlusQ7RTT4
Domaine pattern : Prosite (Expaxy)KRAB_RELATED (PS50806)   
Domains : Interpro (EBI)KRAB    Krueppel-associated_box-rel    SSX    SSXRD_motif   
Domain families : Pfam (Sanger)KRAB (PF01352)    SSXRD (PF09514)   
Domain families : Pfam (NCBI)pfam01352    pfam09514   
Domain families : Smart (EMBL)KRAB (SM00349)  
Conserved Domain (NCBI)SSX8
DMDM Disease mutations280659
Blocks (Seattle)SSX8
SuperfamilyQ7RTT4
Peptide AtlasQ7RTT4
HPRD06728
IPIIPI00176454   
Protein Interaction databases
DIP (DOE-UCLA)Q7RTT4
IntAct (EBI)Q7RTT4
BioGRIDSSX8
STRING (EMBL)SSX8
ZODIACSSX8
Ontologies - Pathways
QuickGOQ7RTT4
Ontology : AmiGOnucleic acid binding  transcription corepressor activity  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  negative regulation of nucleic acid-templated transcription  
Ontology : EGO-EBInucleic acid binding  transcription corepressor activity  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  negative regulation of nucleic acid-templated transcription  
NDEx NetworkSSX8
Atlas of Cancer Signalling NetworkSSX8
Wikipedia pathwaysSSX8
Orthology - Evolution
OrthoDB280659
Phylogenetic Trees/Animal Genes : TreeFamSSX8
HOVERGENQ7RTT4
HOGENOMQ7RTT4
Homologs : HomoloGeneSSX8
Homology/Alignments : Family Browser (UCSC)SSX8
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSSX8 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SSX8
dbVarSSX8
ClinVarSSX8
1000_GenomesSSX8 
Exome Variant ServerSSX8
ExAC (Exome Aggregation Consortium)SSX8 (select the gene name)
Genetic variants : HAPMAP280659
Genomic Variants (DGV)SSX8 [DGVbeta]
DECIPHERSSX8 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSSX8 
Mutations
ICGC Data PortalSSX8 
TCGA Data PortalSSX8 
Broad Tumor PortalSSX8
OASIS PortalSSX8 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSSX8
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SSX8
DgiDB (Drug Gene Interaction Database)SSX8
DoCM (Curated mutations)SSX8 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SSX8 (select a term)
intoGenSSX8
Cancer3DSSX8(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300543   
Orphanet
MedgenSSX8
Genetic Testing Registry SSX8
NextProtQ7RTT4 [Medical]
TSGene280659
GENETestsSSX8
Huge Navigator SSX8 [HugePedia]
snp3D : Map Gene to Disease280659
BioCentury BCIQSSX8
ClinGenSSX8
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD280659
Chemical/Pharm GKB GenePA134957897
Clinical trialSSX8
Miscellaneous
canSAR (ICR)SSX8 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSSX8
EVEXSSX8
GoPubMedSSX8
iHOPSSX8
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:39:16 CEST 2017

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