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SSX9 (SSX family member 9, pseudogene)

Identity

Alias_namessynovial sarcoma, X breakpoint 9
SSX family member 9
Alias_symbol (synonym)SSX9P
Other alias
HGNC (Hugo) SSX9
LocusID (NCBI) 280660
Atlas_Id 42414
Location Xp11.23  [Link to chromosome band Xp11]
Location_base_pair Starts at 48296821 and ends at 48304849 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SSX9   19655
Cards
Entrez_Gene (NCBI)SSX9  280660  SSX family member 9, pseudogene
AliasesSSX9P
GeneCards (Weizmann)SSX9
Ensembl hg19 (Hinxton)ENSG00000204648 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204648 [Gene_View]  chrX:48296821-48304849 [Contig_View]  SSX9 [Vega]
ICGC DataPortalENSG00000204648
TCGA cBioPortalSSX9
AceView (NCBI)SSX9
Genatlas (Paris)SSX9
WikiGenes280660
SOURCE (Princeton)SSX9
Genetics Home Reference (NIH)SSX9
Genomic and cartography
GoldenPath hg38 (UCSC)SSX9  -     chrX:48296821-48304849 -  Xp11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SSX9  -     Xp11.23   [Description]    (hg19-Feb_2009)
EnsemblSSX9 - Xp11.23 [CytoView hg19]  SSX9 - Xp11.23 [CytoView hg38]
Mapping of homologs : NCBISSX9 [Mapview hg19]  SSX9 [Mapview hg38]
OMIM300544   
Gene and transcription
Genbank (Entrez)BC160077 BK000689 DB029485
RefSeq transcript (Entrez)NM_174962
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SSX9
Cluster EST : UnigeneHs.553667 [ NCBI ]
CGAP (NCI)Hs.553667
Alternative Splicing GalleryENSG00000204648
Gene ExpressionSSX9 [ NCBI-GEO ]   SSX9 [ EBI - ARRAY_EXPRESS ]   SSX9 [ SEEK ]   SSX9 [ MEM ]
Gene Expression Viewer (FireBrowse)SSX9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)280660
GTEX Portal (Tissue expression)SSX9
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7RTT3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7RTT3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7RTT3
Splice isoforms : SwissVarQ7RTT3
PhosPhoSitePlusQ7RTT3
Domaine pattern : Prosite (Expaxy)KRAB_RELATED (PS50806)   
Domains : Interpro (EBI)KRAB    Krueppel-associated_box-rel    SSX    SSXRD_motif   
Domain families : Pfam (Sanger)SSXRD (PF09514)   
Domain families : Pfam (NCBI)pfam09514   
Domain families : Smart (EMBL)KRAB (SM00349)  
Conserved Domain (NCBI)SSX9
DMDM Disease mutations280660
Blocks (Seattle)SSX9
SuperfamilyQ7RTT3
Human Protein AtlasENSG00000204648
Peptide AtlasQ7RTT3
HPRD06729
IPIIPI00176455   
Protein Interaction databases
DIP (DOE-UCLA)Q7RTT3
IntAct (EBI)Q7RTT3
FunCoupENSG00000204648
BioGRIDSSX9
STRING (EMBL)SSX9
ZODIACSSX9
Ontologies - Pathways
QuickGOQ7RTT3
Ontology : AmiGOnucleic acid binding  transcription corepressor activity  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  negative regulation of nucleic acid-templated transcription  
Ontology : EGO-EBInucleic acid binding  transcription corepressor activity  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  negative regulation of nucleic acid-templated transcription  
NDEx NetworkSSX9
Atlas of Cancer Signalling NetworkSSX9
Wikipedia pathwaysSSX9
Orthology - Evolution
OrthoDB280660
GeneTree (enSembl)ENSG00000204648
Phylogenetic Trees/Animal Genes : TreeFamSSX9
HOVERGENQ7RTT3
HOGENOMQ7RTT3
Homologs : HomoloGeneSSX9
Homology/Alignments : Family Browser (UCSC)SSX9
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSSX9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SSX9
dbVarSSX9
ClinVarSSX9
1000_GenomesSSX9 
Exome Variant ServerSSX9
ExAC (Exome Aggregation Consortium)SSX9 (select the gene name)
Genetic variants : HAPMAP280660
Genomic Variants (DGV)SSX9 [DGVbeta]
DECIPHERSSX9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSSX9 
Mutations
ICGC Data PortalSSX9 
TCGA Data PortalSSX9 
Broad Tumor PortalSSX9
OASIS PortalSSX9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSSX9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSSX9
BioMutasearch SSX9
DgiDB (Drug Gene Interaction Database)SSX9
DoCM (Curated mutations)SSX9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SSX9 (select a term)
intoGenSSX9
Cancer3DSSX9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300544   
Orphanet
MedgenSSX9
Genetic Testing Registry SSX9
NextProtQ7RTT3 [Medical]
TSGene280660
GENETestsSSX9
Target ValidationSSX9
Huge Navigator SSX9 [HugePedia]
snp3D : Map Gene to Disease280660
BioCentury BCIQSSX9
ClinGenSSX9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD280660
Chemical/Pharm GKB GenePA134882913
Clinical trialSSX9
Miscellaneous
canSAR (ICR)SSX9 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSSX9
EVEXSSX9
GoPubMedSSX9
iHOPSSX9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:57:37 CEST 2017

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