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ST13P4 (ST13, Hsp70 interacting protein pseudogene 4)

Identity

Alias_namesFAM10A4
family with sequence similarity 10
Alias_symbol (synonym)FAM10A4P
Other alias
HGNC (Hugo) ST13P4
LocusID (NCBI) 145165
Atlas_Id 40527
Location 13q14.2  [Link to chromosome band 13q14]
Location_base_pair Starts at 50172018 and ends at 50173615 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ST13P4   18487
Cards
Entrez_Gene (NCBI)ST13P4  145165  ST13, Hsp70 interacting protein pseudogene 4
AliasesFAM10A4; FAM10A4P
GeneCards (Weizmann)ST13P4
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr13:50172018-50173615 [Contig_View]  ST13P4 [Vega]
TCGA cBioPortalST13P4
AceView (NCBI)ST13P4
Genatlas (Paris)ST13P4
WikiGenes145165
SOURCE (Princeton)ST13P4
Genetics Home Reference (NIH)ST13P4
Genomic and cartography
GoldenPath hg38 (UCSC)ST13P4  -     chr13:50172018-50173615 +  13q14.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ST13P4  -     13q14.2   [Description]    (hg19-Feb_2009)
EnsemblST13P4 - 13q14.2 [CytoView hg19]  ST13P4 - 13q14.2 [CytoView hg38]
Mapping of homologs : NCBIST13P4 [Mapview hg19]  ST13P4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF539468
RefSeq transcript (Entrez)NM_153290
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ST13P4
Cluster EST : UnigeneHs.511834 [ NCBI ]
CGAP (NCI)Hs.511834
Gene ExpressionST13P4 [ NCBI-GEO ]   ST13P4 [ EBI - ARRAY_EXPRESS ]   ST13P4 [ SEEK ]   ST13P4 [ MEM ]
Gene Expression Viewer (FireBrowse)ST13P4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)145165
GTEX Portal (Tissue expression)ST13P4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IZP2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IZP2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IZP2
Splice isoforms : SwissVarQ8IZP2
PhosPhoSitePlusQ8IZP2
Domaine pattern : Prosite (Expaxy)TPR (PS50005)    TPR_REGION (PS50293)   
Domains : Interpro (EBI)TPR-contain_dom    TPR-like_helical_dom    TPR_repeat   
Domain families : Pfam (Sanger)TPR_8 (PF13181)   
Domain families : Pfam (NCBI)pfam13181   
Domain families : Smart (EMBL)TPR (SM00028)  
Conserved Domain (NCBI)ST13P4
DMDM Disease mutations145165
Blocks (Seattle)ST13P4
SuperfamilyQ8IZP2
Peptide AtlasQ8IZP2
IPIIPI00218038   
Protein Interaction databases
DIP (DOE-UCLA)Q8IZP2
IntAct (EBI)Q8IZP2
BioGRIDST13P4
STRING (EMBL)ST13P4
ZODIACST13P4
Ontologies - Pathways
QuickGOQ8IZP2
Ontology : AmiGOcytoplasm  protein dimerization activity  extracellular exosome  
Ontology : EGO-EBIcytoplasm  protein dimerization activity  extracellular exosome  
NDEx NetworkST13P4
Atlas of Cancer Signalling NetworkST13P4
Wikipedia pathwaysST13P4
Orthology - Evolution
OrthoDB145165
Phylogenetic Trees/Animal Genes : TreeFamST13P4
HOVERGENQ8IZP2
HOGENOMQ8IZP2
Homologs : HomoloGeneST13P4
Homology/Alignments : Family Browser (UCSC)ST13P4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerST13P4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ST13P4
dbVarST13P4
ClinVarST13P4
1000_GenomesST13P4 
Exome Variant ServerST13P4
ExAC (Exome Aggregation Consortium)ST13P4 (select the gene name)
Genetic variants : HAPMAP145165
Genomic Variants (DGV)ST13P4 [DGVbeta]
DECIPHERST13P4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisST13P4 
Mutations
ICGC Data PortalST13P4 
TCGA Data PortalST13P4 
Broad Tumor PortalST13P4
OASIS PortalST13P4 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDST13P4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ST13P4
DgiDB (Drug Gene Interaction Database)ST13P4
DoCM (Curated mutations)ST13P4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ST13P4 (select a term)
intoGenST13P4
Cancer3DST13P4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenST13P4
Genetic Testing Registry ST13P4
NextProtQ8IZP2 [Medical]
TSGene145165
GENETestsST13P4
Target ValidationST13P4
Huge Navigator ST13P4 [HugePedia]
snp3D : Map Gene to Disease145165
BioCentury BCIQST13P4
ClinGenST13P4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD145165
Chemical/Pharm GKB GenePA38550
Clinical trialST13P4
Miscellaneous
canSAR (ICR)ST13P4 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineST13P4
EVEXST13P4
GoPubMedST13P4
iHOPST13P4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 17:15:50 CEST 2017

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