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ST13P5 (ST13, Hsp70 interacting protein pseudogene 5)

Identity

Alias_namesFAM10A5
family with sequence similarity 10, member A5
family with sequence similarity 10, member A5 pseudogene
Other alias
HGNC (Hugo) ST13P5
LocusID (NCBI) 144106
Atlas_Id 51546
Location 11p15.1  [Link to chromosome band 11p15]
Location_base_pair Starts at 18261909 and ends at 18263501 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)ST13P5   18556
Cards
Entrez_Gene (NCBI)ST13P5  144106  ST13, Hsp70 interacting protein pseudogene 5
AliasesFAM10A5
GeneCards (Weizmann)ST13P5
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr11:18261909-18263501 [Contig_View]  ST13P5 [Vega]
TCGA cBioPortalST13P5
AceView (NCBI)ST13P5
Genatlas (Paris)ST13P5
WikiGenes144106
SOURCE (Princeton)ST13P5
Genetics Home Reference (NIH)ST13P5
Genomic and cartography
GoldenPath hg38 (UCSC)ST13P5  -     chr11:18261909-18263501 +  11p15.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ST13P5  -     11p15.1   [Description]    (hg19-Feb_2009)
EnsemblST13P5 - 11p15.1 [CytoView hg19]  ST13P5 - 11p15.1 [CytoView hg38]
Mapping of homologs : NCBIST13P5 [Mapview hg19]  ST13P5 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF512499
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ST13P5
Cluster EST : UnigeneHs.567697 [ NCBI ]
CGAP (NCI)Hs.567697
Gene ExpressionST13P5 [ NCBI-GEO ]   ST13P5 [ EBI - ARRAY_EXPRESS ]   ST13P5 [ SEEK ]   ST13P5 [ MEM ]
Gene Expression Viewer (FireBrowse)ST13P5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)144106
GTEX Portal (Tissue expression)ST13P5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NFI4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NFI4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NFI4
Splice isoforms : SwissVarQ8NFI4
PhosPhoSitePlusQ8NFI4
Domaine pattern : Prosite (Expaxy)TPR (PS50005)    TPR_REGION (PS50293)   
Domains : Interpro (EBI)STI1_HS-bd    TPR-contain_dom    TPR-like_helical_dom    TPR_repeat   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)STI1 (SM00727)  TPR (SM00028)  
Conserved Domain (NCBI)ST13P5
DMDM Disease mutations144106
Blocks (Seattle)ST13P5
SuperfamilyQ8NFI4
Peptide AtlasQ8NFI4
HPRD13288
IPIIPI00168839   
Protein Interaction databases
DIP (DOE-UCLA)Q8NFI4
IntAct (EBI)Q8NFI4
BioGRIDST13P5
STRING (EMBL)ST13P5
ZODIACST13P5
Ontologies - Pathways
QuickGOQ8NFI4
Ontology : AmiGOcytoplasm  protein dimerization activity  
Ontology : EGO-EBIcytoplasm  protein dimerization activity  
NDEx NetworkST13P5
Atlas of Cancer Signalling NetworkST13P5
Wikipedia pathwaysST13P5
Orthology - Evolution
OrthoDB144106
Phylogenetic Trees/Animal Genes : TreeFamST13P5
HOVERGENQ8NFI4
HOGENOMQ8NFI4
Homologs : HomoloGeneST13P5
Homology/Alignments : Family Browser (UCSC)ST13P5
Gene fusions - Rearrangements
Fusion: Tumor Portal ST13P5
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerST13P5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ST13P5
dbVarST13P5
ClinVarST13P5
1000_GenomesST13P5 
Exome Variant ServerST13P5
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP144106
Genomic Variants (DGV)ST13P5 [DGVbeta]
DECIPHERST13P5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisST13P5 
Mutations
ICGC Data PortalST13P5 
TCGA Data PortalST13P5 
Broad Tumor PortalST13P5
OASIS PortalST13P5 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDST13P5
BioMutasearch ST13P5
DgiDB (Drug Gene Interaction Database)ST13P5
DoCM (Curated mutations)ST13P5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ST13P5 (select a term)
intoGenST13P5
Cancer3DST13P5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenST13P5
Genetic Testing Registry ST13P5
NextProtQ8NFI4 [Medical]
TSGene144106
GENETestsST13P5
Target ValidationST13P5
Huge Navigator ST13P5 [HugePedia]
snp3D : Map Gene to Disease144106
BioCentury BCIQST13P5
ClinGenST13P5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD144106
Chemical/Pharm GKB GenePA38574
Clinical trialST13P5
Miscellaneous
canSAR (ICR)ST13P5 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineST13P5
EVEXST13P5
GoPubMedST13P5
iHOPST13P5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 13:12:54 CET 2017

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