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ST18 (ST18, C2H2C-type zinc finger)

Identity

Alias_namesZNF387
zinc finger protein 387
suppression of tumorigenicity 18 (breast carcinoma) (zinc finger protein)
suppression of tumorigenicity 18, zinc finger
Alias_symbol (synonym)KIAA0535
ZC2HC10
NZF3
ZC2H2C3
Other alias
HGNC (Hugo) ST18
LocusID (NCBI) 9705
Atlas_Id 42419
Location 8q11.23  [Link to chromosome band 8q11]
Location_base_pair Starts at 52110832 and ends at 52409879 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
NCOA2 (8q13.3) / ST18 (8q11.23)PCMTD1 (8q11.23) / ST18 (8q11.23)NCOA2 8q13.3 / ST18 8q11.23
PCMTD1 8q11.23 / ST18 8q11.23

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ST18   18695
Cards
Entrez_Gene (NCBI)ST18  9705  ST18, C2H2C-type zinc finger
AliasesNZF3; ZC2H2C3; ZC2HC10; ZNF387
GeneCards (Weizmann)ST18
Ensembl hg19 (Hinxton)ENSG00000147488 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000147488 [Gene_View]  chr8:52110832-52409879 [Contig_View]  ST18 [Vega]
ICGC DataPortalENSG00000147488
TCGA cBioPortalST18
AceView (NCBI)ST18
Genatlas (Paris)ST18
WikiGenes9705
SOURCE (Princeton)ST18
Genetics Home Reference (NIH)ST18
Genomic and cartography
GoldenPath hg38 (UCSC)ST18  -     chr8:52110832-52409879 -  8q11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ST18  -     8q11.23   [Description]    (hg19-Feb_2009)
EnsemblST18 - 8q11.23 [CytoView hg19]  ST18 - 8q11.23 [CytoView hg38]
Mapping of homologs : NCBIST18 [Mapview hg19]  ST18 [Mapview hg38]
OMIM617155   
Gene and transcription
Genbank (Entrez)AB011107 AK311188 BC025662 BC026316 BC031075
RefSeq transcript (Entrez)NM_014682
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ST18
Cluster EST : UnigeneHs.655499 [ NCBI ]
CGAP (NCI)Hs.655499
Alternative Splicing GalleryENSG00000147488
Gene ExpressionST18 [ NCBI-GEO ]   ST18 [ EBI - ARRAY_EXPRESS ]   ST18 [ SEEK ]   ST18 [ MEM ]
Gene Expression Viewer (FireBrowse)ST18 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9705
GTEX Portal (Tissue expression)ST18
Human Protein AtlasENSG00000147488-ST18 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO60284   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO60284  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO60284
Splice isoforms : SwissVarO60284
PhosPhoSitePlusO60284
Domaine pattern : Prosite (Expaxy)ZF_CCHHC (PS51802)   
Domains : Interpro (EBI)Myelin_TF    Znf_C2HC   
Domain families : Pfam (Sanger)MYT1 (PF08474)    zf-C2HC (PF01530)   
Domain families : Pfam (NCBI)pfam08474    pfam01530   
Conserved Domain (NCBI)ST18
DMDM Disease mutations9705
Blocks (Seattle)ST18
PDB (SRS)2CS8   
PDB (PDBSum)2CS8   
PDB (IMB)2CS8   
PDB (RSDB)2CS8   
Structural Biology KnowledgeBase2CS8   
SCOP (Structural Classification of Proteins)2CS8   
CATH (Classification of proteins structures)2CS8   
SuperfamilyO60284
Human Protein Atlas [tissue]ENSG00000147488-ST18 [tissue]
Peptide AtlasO60284
HPRD18110
IPIIPI00005704   IPI00979476   IPI00790655   IPI00976159   IPI00978239   IPI00979210   
Protein Interaction databases
DIP (DOE-UCLA)O60284
IntAct (EBI)O60284
FunCoupENSG00000147488
BioGRIDST18
STRING (EMBL)ST18
ZODIACST18
Ontologies - Pathways
QuickGOO60284
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  zinc ion binding  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  zinc ion binding  
NDEx NetworkST18
Atlas of Cancer Signalling NetworkST18
Wikipedia pathwaysST18
Orthology - Evolution
OrthoDB9705
GeneTree (enSembl)ENSG00000147488
Phylogenetic Trees/Animal Genes : TreeFamST18
HOVERGENO60284
HOGENOMO60284
Homologs : HomoloGeneST18
Homology/Alignments : Family Browser (UCSC)ST18
Gene fusions - Rearrangements
Fusion : MitelmanNCOA2/ST18 [8q13.3/8q11.23]  [t(8;8)(q11;q13)]  
Fusion : MitelmanPCMTD1/ST18 [8q11.23/8q11.23]  [t(8;8)(q11;q11)]  
Fusion: TCGA_MDACCNCOA2 8q13.3 ST18 8q11.23 SKCM
Fusion: TCGA_MDACCPCMTD1 8q11.23 ST18 8q11.23 BRCA PRAD
Tumor Fusion PortalST18
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerST18 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ST18
dbVarST18
ClinVarST18
1000_GenomesST18 
Exome Variant ServerST18
ExAC (Exome Aggregation Consortium)ENSG00000147488
GNOMAD BrowserENSG00000147488
Genetic variants : HAPMAP9705
Genomic Variants (DGV)ST18 [DGVbeta]
DECIPHERST18 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisST18 
Mutations
ICGC Data PortalST18 
TCGA Data PortalST18 
Broad Tumor PortalST18
OASIS PortalST18 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICST18  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDST18
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ST18
DgiDB (Drug Gene Interaction Database)ST18
DoCM (Curated mutations)ST18 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ST18 (select a term)
intoGenST18
Cancer3DST18(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617155   
Orphanet
DisGeNETST18
MedgenST18
Genetic Testing Registry ST18
NextProtO60284 [Medical]
TSGene9705
GENETestsST18
Target ValidationST18
Huge Navigator ST18 [HugePedia]
snp3D : Map Gene to Disease9705
BioCentury BCIQST18
ClinGenST18
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9705
Chemical/Pharm GKB GenePA38642
Clinical trialST18
Miscellaneous
canSAR (ICR)ST18 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineST18
EVEXST18
GoPubMedST18
iHOPST18
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:36:47 CET 2017

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