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ST20-AS1 (ST20 antisense RNA 1)

Identity

Alias_namesC15orf37
chromosome 15 open reading frame 37
Alias_symbol (synonym)FLJ33788
Other alias
HGNC (Hugo) ST20-AS1
LocusID (NCBI) 283687
Atlas_Id 74265
Location 15q25.1  [Link to chromosome band 15q25]
Location_base_pair Starts at 79922771 and ends at 79924852 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ST20-AS1   27521
Cards
Entrez_Gene (NCBI)ST20-AS1  283687  ST20 antisense RNA 1
AliasesC15orf37
GeneCards (Weizmann)ST20-AS1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr15:79922771-79924852 [Contig_View]  ST20-AS1 [Vega]
TCGA cBioPortalST20-AS1
AceView (NCBI)ST20-AS1
Genatlas (Paris)ST20-AS1
WikiGenes283687
SOURCE (Princeton)ST20-AS1
Genetics Home Reference (NIH)ST20-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)ST20-AS1  -     chr15:79922771-79924852 +  15q25.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ST20-AS1  -     15q25.1   [Description]    (hg19-Feb_2009)
EnsemblST20-AS1 - 15q25.1 [CytoView hg19]  ST20-AS1 - 15q25.1 [CytoView hg38]
Mapping of homologs : NCBIST20-AS1 [Mapview hg19]  ST20-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK091107 AK092679 BC016975 BC101201 BC101202
RefSeq transcript (Entrez)NM_175898
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ST20-AS1
Cluster EST : UnigeneHs.722219 [ NCBI ]
CGAP (NCI)Hs.722219
Gene ExpressionST20-AS1 [ NCBI-GEO ]   ST20-AS1 [ EBI - ARRAY_EXPRESS ]   ST20-AS1 [ SEEK ]   ST20-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)ST20-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)283687
GTEX Portal (Tissue expression)ST20-AS1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NBB2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NBB2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NBB2
Splice isoforms : SwissVarQ8NBB2
PhosPhoSitePlusQ8NBB2
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)ST20-AS1
DMDM Disease mutations283687
Blocks (Seattle)ST20-AS1
SuperfamilyQ8NBB2
Peptide AtlasQ8NBB2
HPRD14147
IPIIPI00168212   IPI00059496   
Protein Interaction databases
DIP (DOE-UCLA)Q8NBB2
IntAct (EBI)Q8NBB2
BioGRIDST20-AS1
STRING (EMBL)ST20-AS1
ZODIACST20-AS1
Ontologies - Pathways
QuickGOQ8NBB2
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkST20-AS1
Atlas of Cancer Signalling NetworkST20-AS1
Wikipedia pathwaysST20-AS1
Orthology - Evolution
OrthoDB283687
Phylogenetic Trees/Animal Genes : TreeFamST20-AS1
HOVERGENQ8NBB2
HOGENOMQ8NBB2
Homologs : HomoloGeneST20-AS1
Homology/Alignments : Family Browser (UCSC)ST20-AS1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerST20-AS1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ST20-AS1
dbVarST20-AS1
ClinVarST20-AS1
1000_GenomesST20-AS1 
Exome Variant ServerST20-AS1
ExAC (Exome Aggregation Consortium)ST20-AS1 (select the gene name)
Genetic variants : HAPMAP283687
Genomic Variants (DGV)ST20-AS1 [DGVbeta]
DECIPHERST20-AS1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisST20-AS1 
Mutations
ICGC Data PortalST20-AS1 
TCGA Data PortalST20-AS1 
Broad Tumor PortalST20-AS1
OASIS PortalST20-AS1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDST20-AS1
BioMutasearch ST20-AS1
DgiDB (Drug Gene Interaction Database)ST20-AS1
DoCM (Curated mutations)ST20-AS1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ST20-AS1 (select a term)
intoGenST20-AS1
Cancer3DST20-AS1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenST20-AS1
Genetic Testing Registry ST20-AS1
NextProtQ8NBB2 [Medical]
TSGene283687
GENETestsST20-AS1
Target ValidationST20-AS1
Huge Navigator ST20-AS1 [HugePedia]
snp3D : Map Gene to Disease283687
BioCentury BCIQST20-AS1
ClinGenST20-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD283687
Chemical/Pharm GKB GenePA142672273
Clinical trialST20-AS1
Miscellaneous
canSAR (ICR)ST20-AS1 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineST20-AS1
EVEXST20-AS1
GoPubMedST20-AS1
iHOPST20-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:40:33 CEST 2017

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