Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ST20 (suppressor of tumorigenicity 20)

Identity

Alias_symbol (synonym)HCCS-1
Other alias
HGNC (Hugo) ST20
LocusID (NCBI) 400410
Atlas_Id 47665
Location 15q25.1  [Link to chromosome band 15q25]
Location_base_pair Starts at 79898840 and ends at 79915256 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ST20 (15q25.1) / TARP (7p14.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ST20   33520
Cards
Entrez_Gene (NCBI)ST20  400410  suppressor of tumorigenicity 20
AliasesHCCS-1
GeneCards (Weizmann)ST20
Ensembl hg19 (Hinxton)ENSG00000180953 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000180953 [Gene_View]  chr15:79898840-79915256 [Contig_View]  ST20 [Vega]
ICGC DataPortalENSG00000180953
TCGA cBioPortalST20
AceView (NCBI)ST20
Genatlas (Paris)ST20
WikiGenes400410
SOURCE (Princeton)ST20
Genetics Home Reference (NIH)ST20
Genomic and cartography
GoldenPath hg38 (UCSC)ST20  -     chr15:79898840-79915256 -  15q25.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ST20  -     15q25.1   [Description]    (hg19-Feb_2009)
EnsemblST20 - 15q25.1 [CytoView hg19]  ST20 - 15q25.1 [CytoView hg38]
Mapping of homologs : NCBIST20 [Mapview hg19]  ST20 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA282293 AF249277 AL109714 BM559302 BQ680929
RefSeq transcript (Entrez)NM_001100879 NM_001100880 NM_001199757
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ST20
Cluster EST : UnigeneHs.729127 [ NCBI ]
CGAP (NCI)Hs.729127
Alternative Splicing GalleryENSG00000180953
Gene ExpressionST20 [ NCBI-GEO ]   ST20 [ EBI - ARRAY_EXPRESS ]   ST20 [ SEEK ]   ST20 [ MEM ]
Gene Expression Viewer (FireBrowse)ST20 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)400410
GTEX Portal (Tissue expression)ST20
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9HBF5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9HBF5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9HBF5
Splice isoforms : SwissVarQ9HBF5
PhosPhoSitePlusQ9HBF5
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)ST20
DMDM Disease mutations400410
Blocks (Seattle)ST20
SuperfamilyQ9HBF5
Human Protein AtlasENSG00000180953
Peptide AtlasQ9HBF5
IPIIPI00401867   
Protein Interaction databases
DIP (DOE-UCLA)Q9HBF5
IntAct (EBI)Q9HBF5
FunCoupENSG00000180953
BioGRIDST20
STRING (EMBL)ST20
ZODIACST20
Ontologies - Pathways
QuickGOQ9HBF5
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkST20
Atlas of Cancer Signalling NetworkST20
Wikipedia pathwaysST20
Orthology - Evolution
OrthoDB400410
GeneTree (enSembl)ENSG00000180953
Phylogenetic Trees/Animal Genes : TreeFamST20
HOVERGENQ9HBF5
HOGENOMQ9HBF5
Homologs : HomoloGeneST20
Homology/Alignments : Family Browser (UCSC)ST20
Gene fusions - Rearrangements
Fusion Cancer (Beijing)ST20 [15q25.1]  -  TARP [7p14.1]  [FUSC004707]
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerST20 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ST20
dbVarST20
ClinVarST20
1000_GenomesST20 
Exome Variant ServerST20
ExAC (Exome Aggregation Consortium)ST20 (select the gene name)
Genetic variants : HAPMAP400410
Genomic Variants (DGV)ST20 [DGVbeta]
DECIPHERST20 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisST20 
Mutations
ICGC Data PortalST20 
TCGA Data PortalST20 
Broad Tumor PortalST20
OASIS PortalST20 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICST20  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDST20
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ST20
DgiDB (Drug Gene Interaction Database)ST20
DoCM (Curated mutations)ST20 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ST20 (select a term)
intoGenST20
Cancer3DST20(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenST20
Genetic Testing Registry ST20
NextProtQ9HBF5 [Medical]
TSGene400410
GENETestsST20
Huge Navigator ST20 [HugePedia]
snp3D : Map Gene to Disease400410
BioCentury BCIQST20
ClinGenST20
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD400410
Chemical/Pharm GKB GenePA162404859
Clinical trialST20
Miscellaneous
canSAR (ICR)ST20 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineST20
EVEXST20
GoPubMedST20
iHOPST20
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 12:39:23 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.