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ST3GAL1 (ST3 beta-galactoside alpha-2,3-sialyltransferase 1)

Identity

Other namesGal-NAc6S
SIAT4A
SIATFL
ST3GalA
ST3GalA.1
ST3GalIA
ST3GalIA,1
ST3O
HGNC (Hugo) ST3GAL1
LocusID (NCBI) 6482
Location 8q24.22
Location_base_pair Starts at 134467091 and ends at 134584183 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

External links

Nomenclature
HGNC (Hugo)ST3GAL1   10862
Entrez_Gene (NCBI)ST3GAL1  6482  ST3 beta-galactoside alpha-2,3-sialyltransferase 1
Cards
GeneCards (Weizmann)ST3GAL1
Ensembl (Hinxton)ENSG00000008513 [Gene_View]  chr8:134467091-134584183 [Contig_View]  ST3GAL1 [Vega]
AceView (NCBI)ST3GAL1
Genatlas (Paris)ST3GAL1
SOURCE (Stanford)NM_003033 NM_173344
Genomic and cartography
GoldenPath (UCSC)ST3GAL1  -  8q24.22   chr8:134467091-134584183 -  8q24.22   [Description]    (hg19-Feb_2009)
EnsemblST3GAL1 - 8q24.22 [CytoView]
Mapping of homologs : NCBIST3GAL1 [Mapview]
OMIM607187   
Gene and transcription
Genbank (Entrez)AF059321 AK093867 AK311319 AL709325 AL833743
RefSeq transcript (SRS)NM_003033 NM_173344
RefSeq transcript (Entrez)NM_003033 NM_173344
RefSeq genomic (SRS)AC_000140 NC_000008 NC_018919 NT_008046 NW_001839138 NW_004078037
RefSeq genomic (Entrez)AC_000140 NC_000008 NC_018919 NT_008046 NW_001839138 NW_004078037
Consensus coding sequences : CCDS (NCBI)ST3GAL1
Cluster EST : UnigeneHs.374257 [ SRS ] Hs.374257 [ NCBI ]
CGAP (NCI)Hs.374257
Alternative Splicing : Fast-db (Paris)GSHG0029879
Alternative Splicing GalleryENSG00000008513
Gene ExpressionST3GAL1 [ NCBI-GEO ]   ST3GAL1 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ11201 (SRS) Q11201 (Uniprot)
NextProtQ11201
With graphics : InterProQ11201
Splice isoforms : SwissVarQ11201(Swissvar)
Domains : Interpro (SRS)Glyco_trans_29    Sialyl_trans   
Domains : Interpro (EBI)Glyco_trans_29    Sialyl_trans   
Related proteins : CluSTrQ11201
Domain families : Pfam (SRS)Glyco_transf_29 (PF00777)   
Domain families : Pfam (Sanger)Glyco_transf_29 (PF00777)   
Domain families : Pfam (NCBI)pfam00777   
DMDM6482
Blocks (Seattle)Q11201
Human Protein AtlasENSG00000008513
HPRD06219
IPIIPI00009629   IPI00983429   IPI00976740   IPI00985299   IPI00979786   IPI00982119   
Protein Interaction databases
DIP (DOE-UCLA)Q11201
IntAct (EBI)Q11201
FunCoupENSG00000008513
REACTOMEST3GAL1
Protein Interaction Database6482
BioGRIDST3GAL1
InParanoidQ11201
Interologous Interaction database Q11201
IntegromeDBST3GAL1
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)ST3GAL1
SNP (GeneSNP Utah)ST3GAL1
SNP : HGBaseST3GAL1
Genetic variants : HAPMAPST3GAL1
Somatic Mutations in Cancer : COSMICST3GAL1 
CONAN: Copy Number AnalysisST3GAL1 
Mutations and Diseases : HGMDST3GAL1
OMIM607187   
GENETests607187   
Disease Genetic AssociationST3GAL1
Huge Navigator ST3GAL1 [HugePedia]  ST3GAL1 [HugeCancerGEM]
Genomic VariantsST3GAL1  ST3GAL1 [DGVbeta]
snp3D : Map Gene to Disease6482
General knowledge
Homologs : HomoloGeneST3GAL1
Homology/Alignments : Family Browser (UCSC)ST3GAL1
Phylogenetic Trees/Animal Genes : TreeFamST3GAL1
Catalytic activity : Enzyme2.4.99.4 [ Enzyme-Expasy ]   2.4.99.4 [ Enzyme-SRS ]   2.4.99.4 [ IntEnz-EBI ]   2.4.99.4 [ BRENDA ]   2.4.99.4 [ KEGG ]   
Chemical/Protein Interactions : CTD6482
Chemical/Pharm GKB GenePA35764
Clinical trialST3GAL1
Cancer Resource (Charite)ENSG00000008513
Ontology : AmiGOGolgi membrane  beta-galactoside (CMP) alpha-2,3-sialyltransferase activity  extracellular region  carbohydrate metabolic process  cellular protein modification process  protein phosphorylation  O-glycan processing  keratan sulfate biosynthetic process  integral to Golgi membrane  glycosaminoglycan metabolic process  Golgi cisterna membrane  keratan sulfate metabolic process  post-translational protein modification  cellular protein metabolic process  small molecule metabolic process  
Ontology : EGO-EBIGolgi membrane  beta-galactoside (CMP) alpha-2,3-sialyltransferase activity  extracellular region  carbohydrate metabolic process  cellular protein modification process  protein phosphorylation  O-glycan processing  keratan sulfate biosynthetic process  integral to Golgi membrane  glycosaminoglycan metabolic process  Golgi cisterna membrane  keratan sulfate metabolic process  post-translational protein modification  cellular protein metabolic process  small molecule metabolic process  
Pathways : KEGGGlycosphingolipid biosynthesis - globoseriesKeratan sulfate biosynthesisGlycan structures - biosynthesis 2Glycosphingolipid biosynthesis - ganglioseriesO-Glycan biosynthesisGlycan structures - biosynthesis 1
Other databases
Probes
Litterature
PubMed25 Pubmed reference(s) in Entrez
PubGeneST3GAL1
iHOPST3GAL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:36:35 CEST 2013
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