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ST3GAL4 (ST3 beta-galactoside alpha-2,3-sialyltransferase 4)

Identity

Alias_namesCGS23
SIAT4
NANTA3
SIAT4C
sialyltransferase 4C (beta-galactosidase alpha-2
Alias_symbol (synonym)STZ
SAT3
FLJ11867
Other aliasST-4
ST3GalA.2
ST3GalIV
gal-NAc6S
HGNC (Hugo) ST3GAL4
LocusID (NCBI) 6484
Atlas_Id 45689
Location 11q24.2  [Link to chromosome band 11q24]
Location_base_pair Starts at 126355645 and ends at 126414641 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ST3GAL4 (11q24.2) / CAMK2G (10q22.2)ST3GAL4 (11q24.2) / LPAR2 (19p13.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ST3GAL4   10864
Cards
Entrez_Gene (NCBI)ST3GAL4  6484  ST3 beta-galactoside alpha-2,3-sialyltransferase 4
AliasesCGS23; NANTA3; SAT3; SIAT4; 
SIAT4C; ST-4; ST3GalA.2; ST3GalIV; STZ; gal-NAc6S
GeneCards (Weizmann)ST3GAL4
Ensembl hg19 (Hinxton)ENSG00000110080 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000110080 [Gene_View]  chr11:126355645-126414641 [Contig_View]  ST3GAL4 [Vega]
ICGC DataPortalENSG00000110080
TCGA cBioPortalST3GAL4
AceView (NCBI)ST3GAL4
Genatlas (Paris)ST3GAL4
WikiGenes6484
SOURCE (Princeton)ST3GAL4
Genetics Home Reference (NIH)ST3GAL4
Genomic and cartography
GoldenPath hg38 (UCSC)ST3GAL4  -     chr11:126355645-126414641 +  11q24.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ST3GAL4  -     11q24.2   [Description]    (hg19-Feb_2009)
EnsemblST3GAL4 - 11q24.2 [CytoView hg19]  ST3GAL4 - 11q24.2 [CytoView hg38]
Mapping of homologs : NCBIST3GAL4 [Mapview hg19]  ST3GAL4 [Mapview hg38]
OMIM104240   
Gene and transcription
Genbank (Entrez)AB009393 AF035249 AF516602 AF516603 AF516604
RefSeq transcript (Entrez)NM_001254757 NM_001254758 NM_001254759 NM_001348396 NM_001348397 NM_001348398 NM_001348399 NM_001348400 NM_006278
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ST3GAL4
Cluster EST : UnigeneHs.591947 [ NCBI ]
CGAP (NCI)Hs.591947
Alternative Splicing GalleryENSG00000110080
Gene ExpressionST3GAL4 [ NCBI-GEO ]   ST3GAL4 [ EBI - ARRAY_EXPRESS ]   ST3GAL4 [ SEEK ]   ST3GAL4 [ MEM ]
Gene Expression Viewer (FireBrowse)ST3GAL4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6484
GTEX Portal (Tissue expression)ST3GAL4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ11206   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ11206  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ11206
Splice isoforms : SwissVarQ11206
Catalytic activity : Enzyme2.4.99.- [ Enzyme-Expasy ]   2.4.99.-2.4.99.- [ IntEnz-EBI ]   2.4.99.- [ BRENDA ]   2.4.99.- [ KEGG ]   
PhosPhoSitePlusQ11206
Domains : Interpro (EBI)Glyco_trans_29    Sialyl_trans   
Domain families : Pfam (Sanger)Glyco_transf_29 (PF00777)   
Domain families : Pfam (NCBI)pfam00777   
Conserved Domain (NCBI)ST3GAL4
DMDM Disease mutations6484
Blocks (Seattle)ST3GAL4
SuperfamilyQ11206
Human Protein AtlasENSG00000110080
Peptide AtlasQ11206
HPRD00084
IPIIPI00009631   IPI00216273   IPI00216274   IPI00216275   IPI00795122   IPI00306884   IPI00915916   IPI00981900   IPI00978121   IPI00978778   IPI00979544   IPI00980130   IPI00984794   
Protein Interaction databases
DIP (DOE-UCLA)Q11206
IntAct (EBI)Q11206
FunCoupENSG00000110080
BioGRIDST3GAL4
STRING (EMBL)ST3GAL4
ZODIACST3GAL4
Ontologies - Pathways
QuickGOQ11206
Ontology : AmiGOGolgi membrane  beta-galactoside (CMP) alpha-2,3-sialyltransferase activity  oligosaccharide metabolic process  membrane  O-glycan processing  keratan sulfate biosynthetic process  protein N-linked glycosylation via asparagine  integral component of Golgi membrane  Golgi cisterna membrane  monosialoganglioside sialyltransferase activity  cognition  extracellular exosome  sialylation  
Ontology : EGO-EBIGolgi membrane  beta-galactoside (CMP) alpha-2,3-sialyltransferase activity  oligosaccharide metabolic process  membrane  O-glycan processing  keratan sulfate biosynthetic process  protein N-linked glycosylation via asparagine  integral component of Golgi membrane  Golgi cisterna membrane  monosialoganglioside sialyltransferase activity  cognition  extracellular exosome  sialylation  
Pathways : BIOCARTASteps in the Glycosylation of Mammalian N-linked Oligosaccarides [Genes]   
Pathways : KEGGGlycosphingolipid biosynthesis - lacto and neolacto series   
NDEx NetworkST3GAL4
Atlas of Cancer Signalling NetworkST3GAL4
Wikipedia pathwaysST3GAL4
Orthology - Evolution
OrthoDB6484
GeneTree (enSembl)ENSG00000110080
Phylogenetic Trees/Animal Genes : TreeFamST3GAL4
HOVERGENQ11206
HOGENOMQ11206
Homologs : HomoloGeneST3GAL4
Homology/Alignments : Family Browser (UCSC)ST3GAL4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerST3GAL4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ST3GAL4
dbVarST3GAL4
ClinVarST3GAL4
1000_GenomesST3GAL4 
Exome Variant ServerST3GAL4
ExAC (Exome Aggregation Consortium)ST3GAL4 (select the gene name)
Genetic variants : HAPMAP6484
Genomic Variants (DGV)ST3GAL4 [DGVbeta]
DECIPHERST3GAL4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisST3GAL4 
Mutations
ICGC Data PortalST3GAL4 
TCGA Data PortalST3GAL4 
Broad Tumor PortalST3GAL4
OASIS PortalST3GAL4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICST3GAL4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDST3GAL4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ST3GAL4
DgiDB (Drug Gene Interaction Database)ST3GAL4
DoCM (Curated mutations)ST3GAL4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ST3GAL4 (select a term)
intoGenST3GAL4
Cancer3DST3GAL4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM104240   
Orphanet
MedgenST3GAL4
Genetic Testing Registry ST3GAL4
NextProtQ11206 [Medical]
TSGene6484
GENETestsST3GAL4
Target ValidationST3GAL4
Huge Navigator ST3GAL4 [HugePedia]
snp3D : Map Gene to Disease6484
BioCentury BCIQST3GAL4
ClinGenST3GAL4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6484
Chemical/Pharm GKB GenePA35766
Clinical trialST3GAL4
Miscellaneous
canSAR (ICR)ST3GAL4 (select the gene name)
Probes
Litterature
PubMed46 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineST3GAL4
EVEXST3GAL4
GoPubMedST3GAL4
iHOPST3GAL4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Sep 25 19:33:19 CEST 2017

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