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ST3GAL5 (ST3 beta-galactoside alpha-2,3-sialyltransferase 5)

Identity

Alias_namesSIAT9
sialyltransferase 9 (CMP-NeuAc:lactosylceramide alpha-2
Alias_symbol (synonym)ST3GalV
SIATGM3S
Other aliasSATI
SPDRS
HGNC (Hugo) ST3GAL5
LocusID (NCBI) 8869
Atlas_Id 51375
Location 2p11.2  [Link to chromosome band 2p11]
Location_base_pair Starts at 85839149 and ends at 85867670 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ADGRL3 (4q13.1) / ST3GAL5 (2p11.2)ST3GAL5 (2p11.2) / KCMF1 (2p11.2)ST3GAL5 (2p11.2) / ST3GAL5 (2p11.2)
LPHN3 ST3GAL5 2p11.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ST3GAL5   10872
Cards
Entrez_Gene (NCBI)ST3GAL5  8869  ST3 beta-galactoside alpha-2,3-sialyltransferase 5
AliasesSATI; SIAT9; SIATGM3S; SPDRS; 
ST3GalV
GeneCards (Weizmann)ST3GAL5
Ensembl hg19 (Hinxton)ENSG00000115525 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000115525 [Gene_View]  chr2:85839149-85867670 [Contig_View]  ST3GAL5 [Vega]
ICGC DataPortalENSG00000115525
TCGA cBioPortalST3GAL5
AceView (NCBI)ST3GAL5
Genatlas (Paris)ST3GAL5
WikiGenes8869
SOURCE (Princeton)ST3GAL5
Genetics Home Reference (NIH)ST3GAL5
Genomic and cartography
GoldenPath hg38 (UCSC)ST3GAL5  -     chr2:85839149-85867670 -  2p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ST3GAL5  -     2p11.2   [Description]    (hg19-Feb_2009)
EnsemblST3GAL5 - 2p11.2 [CytoView hg19]  ST3GAL5 - 2p11.2 [CytoView hg38]
Mapping of homologs : NCBIST3GAL5 [Mapview hg19]  ST3GAL5 [Mapview hg38]
OMIM604402   609056   
Gene and transcription
Genbank (Entrez)AB018356 AF105026 AF119415 AF119417 AF119418
RefSeq transcript (Entrez)NM_001042437 NM_003896
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ST3GAL5
Cluster EST : UnigeneHs.415117 [ NCBI ]
CGAP (NCI)Hs.415117
Alternative Splicing GalleryENSG00000115525
Gene ExpressionST3GAL5 [ NCBI-GEO ]   ST3GAL5 [ EBI - ARRAY_EXPRESS ]   ST3GAL5 [ SEEK ]   ST3GAL5 [ MEM ]
Gene Expression Viewer (FireBrowse)ST3GAL5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8869
GTEX Portal (Tissue expression)ST3GAL5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UNP4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UNP4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UNP4
Splice isoforms : SwissVarQ9UNP4
Catalytic activity : Enzyme2.4.99.9 [ Enzyme-Expasy ]   2.4.99.92.4.99.9 [ IntEnz-EBI ]   2.4.99.9 [ BRENDA ]   2.4.99.9 [ KEGG ]   
PhosPhoSitePlusQ9UNP4
Domains : Interpro (EBI)Glyco_trans_29    Sialyl_trans   
Domain families : Pfam (Sanger)Glyco_transf_29 (PF00777)   
Domain families : Pfam (NCBI)pfam00777   
Conserved Domain (NCBI)ST3GAL5
DMDM Disease mutations8869
Blocks (Seattle)ST3GAL5
SuperfamilyQ9UNP4
Human Protein AtlasENSG00000115525
Peptide AtlasQ9UNP4
HPRD05098
IPIIPI00761101   IPI00746651   IPI00793901   IPI00915838   IPI00446027   IPI00917786   IPI00916667   
Protein Interaction databases
DIP (DOE-UCLA)Q9UNP4
IntAct (EBI)Q9UNP4
FunCoupENSG00000115525
BioGRIDST3GAL5
STRING (EMBL)ST3GAL5
ZODIACST3GAL5
Ontologies - Pathways
QuickGOQ9UNP4
Ontology : AmiGOGolgi membrane  Golgi membrane  ganglioside biosynthetic process  beta-galactoside (CMP) alpha-2,3-sialyltransferase activity  neolactotetraosylceramide alpha-2,3-sialyltransferase activity  integral component of plasma membrane  carbohydrate metabolic process  glycosphingolipid biosynthetic process  sialyltransferase activity  oligosaccharide metabolic process  integral component of membrane  protein N-linked glycosylation via asparagine  integral component of Golgi membrane  lactosylceramide alpha-2,3-sialyltransferase activity  sialylation  
Ontology : EGO-EBIGolgi membrane  Golgi membrane  ganglioside biosynthetic process  beta-galactoside (CMP) alpha-2,3-sialyltransferase activity  neolactotetraosylceramide alpha-2,3-sialyltransferase activity  integral component of plasma membrane  carbohydrate metabolic process  glycosphingolipid biosynthetic process  sialyltransferase activity  oligosaccharide metabolic process  integral component of membrane  protein N-linked glycosylation via asparagine  integral component of Golgi membrane  lactosylceramide alpha-2,3-sialyltransferase activity  sialylation  
Pathways : KEGGGlycosphingolipid biosynthesis - ganglio series   
NDEx NetworkST3GAL5
Atlas of Cancer Signalling NetworkST3GAL5
Wikipedia pathwaysST3GAL5
Orthology - Evolution
OrthoDB8869
GeneTree (enSembl)ENSG00000115525
Phylogenetic Trees/Animal Genes : TreeFamST3GAL5
HOVERGENQ9UNP4
HOGENOMQ9UNP4
Homologs : HomoloGeneST3GAL5
Homology/Alignments : Family Browser (UCSC)ST3GAL5
Gene fusions - Rearrangements
Fusion : MitelmanLPHN3/2p11.2 [ST3GAL5/t(2;4)(p11;q13)]  
Fusion: TCGALPHN3 ST3GAL5 2p11.2 LGG
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerST3GAL5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ST3GAL5
dbVarST3GAL5
ClinVarST3GAL5
1000_GenomesST3GAL5 
Exome Variant ServerST3GAL5
ExAC (Exome Aggregation Consortium)ST3GAL5 (select the gene name)
Genetic variants : HAPMAP8869
Genomic Variants (DGV)ST3GAL5 [DGVbeta]
DECIPHERST3GAL5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisST3GAL5 
Mutations
ICGC Data PortalST3GAL5 
TCGA Data PortalST3GAL5 
Broad Tumor PortalST3GAL5
OASIS PortalST3GAL5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICST3GAL5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDST3GAL5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ST3GAL5
DgiDB (Drug Gene Interaction Database)ST3GAL5
DoCM (Curated mutations)ST3GAL5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ST3GAL5 (select a term)
intoGenST3GAL5
Cancer3DST3GAL5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604402    609056   
Orphanet17933    22505   
MedgenST3GAL5
Genetic Testing Registry ST3GAL5
NextProtQ9UNP4 [Medical]
TSGene8869
GENETestsST3GAL5
Huge Navigator ST3GAL5 [HugePedia]
snp3D : Map Gene to Disease8869
BioCentury BCIQST3GAL5
ClinGenST3GAL5 (curated)
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8869
Chemical/Pharm GKB GenePA35773
Clinical trialST3GAL5
Miscellaneous
canSAR (ICR)ST3GAL5 (select the gene name)
Probes
Litterature
PubMed33 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineST3GAL5
EVEXST3GAL5
GoPubMedST3GAL5
iHOPST3GAL5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:39:24 CEST 2017

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