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ST3GAL6 (ST3 beta-galactoside alpha-2,3-sialyltransferase 6)

Identity

Alias_namesSIAT10
sialyltransferase 10 (alpha-2
Alias_symbol (synonym)ST3GALVI
Other alias
HGNC (Hugo) ST3GAL6
LocusID (NCBI) 10402
Atlas_Id 50332
Location 3q12.1  [Link to chromosome band 3q12]
Location_base_pair Starts at 98732236 and ends at 98795845 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
DCBLD2 (3q12.1) / ST3GAL6 (3q12.1)DCBLD2 3q12.1 / ST3GAL6 3q12.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ST3GAL6   18080
Cards
Entrez_Gene (NCBI)ST3GAL6  10402  ST3 beta-galactoside alpha-2,3-sialyltransferase 6
AliasesSIAT10; ST3GALVI
GeneCards (Weizmann)ST3GAL6
Ensembl hg19 (Hinxton)ENSG00000064225 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000064225 [Gene_View]  chr3:98732236-98795845 [Contig_View]  ST3GAL6 [Vega]
ICGC DataPortalENSG00000064225
TCGA cBioPortalST3GAL6
AceView (NCBI)ST3GAL6
Genatlas (Paris)ST3GAL6
WikiGenes10402
SOURCE (Princeton)ST3GAL6
Genetics Home Reference (NIH)ST3GAL6
Genomic and cartography
GoldenPath hg38 (UCSC)ST3GAL6  -     chr3:98732236-98795845 +  3q12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ST3GAL6  -     3q12.1   [Description]    (hg19-Feb_2009)
EnsemblST3GAL6 - 3q12.1 [CytoView hg19]  ST3GAL6 - 3q12.1 [CytoView hg38]
Mapping of homologs : NCBIST3GAL6 [Mapview hg19]  ST3GAL6 [Mapview hg38]
OMIM607156   
Gene and transcription
Genbank (Entrez)AB022918 AF119391 AK001922 AK315111 AL539506
RefSeq transcript (Entrez)NM_001271142 NM_001271145 NM_001271146 NM_001271147 NM_001271148 NM_001323352 NM_001323353 NM_001323358 NM_001323359 NM_001323360 NM_001323362 NM_001323363 NM_001323364 NM_001323365 NM_001323366 NM_001323367 NM_001323368 NM_006100
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ST3GAL6
Cluster EST : UnigeneHs.148716 [ NCBI ]
CGAP (NCI)Hs.148716
Alternative Splicing GalleryENSG00000064225
Gene ExpressionST3GAL6 [ NCBI-GEO ]   ST3GAL6 [ EBI - ARRAY_EXPRESS ]   ST3GAL6 [ SEEK ]   ST3GAL6 [ MEM ]
Gene Expression Viewer (FireBrowse)ST3GAL6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10402
GTEX Portal (Tissue expression)ST3GAL6
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y274   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y274  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y274
Splice isoforms : SwissVarQ9Y274
Catalytic activity : Enzyme2.4.99.- [ Enzyme-Expasy ]   2.4.99.-2.4.99.- [ IntEnz-EBI ]   2.4.99.- [ BRENDA ]   2.4.99.- [ KEGG ]   
PhosPhoSitePlusQ9Y274
Domains : Interpro (EBI)Glyco_trans_29    Sialyl_trans   
Domain families : Pfam (Sanger)Glyco_transf_29 (PF00777)   
Domain families : Pfam (NCBI)pfam00777   
Conserved Domain (NCBI)ST3GAL6
DMDM Disease mutations10402
Blocks (Seattle)ST3GAL6
SuperfamilyQ9Y274
Human Protein AtlasENSG00000064225
Peptide AtlasQ9Y274
HPRD06195
IPIIPI00184851   IPI00793350   IPI00946010   IPI00946341   IPI00946530   IPI00982896   IPI00945249   IPI00946506   IPI00792485   IPI00946609   IPI00946162   IPI00946314   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y274
IntAct (EBI)Q9Y274
FunCoupENSG00000064225
BioGRIDST3GAL6
STRING (EMBL)ST3GAL6
ZODIACST3GAL6
Ontologies - Pathways
QuickGOQ9Y274
Ontology : AmiGOGolgi membrane  beta-galactoside (CMP) alpha-2,3-sialyltransferase activity  cellular protein modification process  glycolipid metabolic process  oligosaccharide metabolic process  integral component of membrane  keratan sulfate biosynthetic process  protein N-linked glycosylation via asparagine  integral component of Golgi membrane  beta-galactoside alpha-2,3-sialyltransferase activity  extracellular exosome  cellular response to interleukin-6  sialylation  
Ontology : EGO-EBIGolgi membrane  beta-galactoside (CMP) alpha-2,3-sialyltransferase activity  cellular protein modification process  glycolipid metabolic process  oligosaccharide metabolic process  integral component of membrane  keratan sulfate biosynthetic process  protein N-linked glycosylation via asparagine  integral component of Golgi membrane  beta-galactoside alpha-2,3-sialyltransferase activity  extracellular exosome  cellular response to interleukin-6  sialylation  
Pathways : KEGGGlycosphingolipid biosynthesis - lacto and neolacto series   
NDEx NetworkST3GAL6
Atlas of Cancer Signalling NetworkST3GAL6
Wikipedia pathwaysST3GAL6
Orthology - Evolution
OrthoDB10402
GeneTree (enSembl)ENSG00000064225
Phylogenetic Trees/Animal Genes : TreeFamST3GAL6
HOVERGENQ9Y274
HOGENOMQ9Y274
Homologs : HomoloGeneST3GAL6
Homology/Alignments : Family Browser (UCSC)ST3GAL6
Gene fusions - Rearrangements
Fusion : MitelmanDCBLD2/ST3GAL6 [3q12.1/3q12.1]  [t(3;3)(q12;q12)]  
Fusion: TCGADCBLD2 3q12.1 ST3GAL6 3q12.1 LUAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerST3GAL6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ST3GAL6
dbVarST3GAL6
ClinVarST3GAL6
1000_GenomesST3GAL6 
Exome Variant ServerST3GAL6
ExAC (Exome Aggregation Consortium)ST3GAL6 (select the gene name)
Genetic variants : HAPMAP10402
Genomic Variants (DGV)ST3GAL6 [DGVbeta]
DECIPHERST3GAL6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisST3GAL6 
Mutations
ICGC Data PortalST3GAL6 
TCGA Data PortalST3GAL6 
Broad Tumor PortalST3GAL6
OASIS PortalST3GAL6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICST3GAL6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDST3GAL6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ST3GAL6
DgiDB (Drug Gene Interaction Database)ST3GAL6
DoCM (Curated mutations)ST3GAL6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ST3GAL6 (select a term)
intoGenST3GAL6
Cancer3DST3GAL6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607156   
Orphanet
MedgenST3GAL6
Genetic Testing Registry ST3GAL6
NextProtQ9Y274 [Medical]
TSGene10402
GENETestsST3GAL6
Target ValidationST3GAL6
Huge Navigator ST3GAL6 [HugePedia]
snp3D : Map Gene to Disease10402
BioCentury BCIQST3GAL6
ClinGenST3GAL6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10402
Chemical/Pharm GKB GenePA134958548
Clinical trialST3GAL6
Miscellaneous
canSAR (ICR)ST3GAL6 (select the gene name)
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineST3GAL6
EVEXST3GAL6
GoPubMedST3GAL6
iHOPST3GAL6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:57:44 CEST 2017

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