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ST6GALNAC2 (ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 2)

Identity

Alias (NCBI)SAITL1
SIAT7
SIAT7B
SIATL1
ST6GalNAII
STHM
HGNC (Hugo) ST6GALNAC2
HGNC Alias symbST6GalNAII
STHM
HGNC Previous nameSIAT7
 SIAT7B
 SIATL1
HGNC Previous namesialyltransferase 7 ((alpha-N-acetylneuraminyl-2,3-beta-galactosyl-1,3)-N-acetyl galactosaminide alpha-2,6-sialyltransferase)
 sialyltransferase-like 1
 ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2
 ST6 GalNAc alpha-2,6-sialyltransferase 2
LocusID (NCBI) 10610
Atlas_Id 54978
Location 17q25.1  [Link to chromosome band 17q25]
Location_base_pair Starts at 76565377 and ends at 76585860 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
PRKCA (17q24.2) / ST6GALNAC2 (17q25.1)PRPSAP1 (17q25.1) / ST6GALNAC2 (17q25.1)ST6GALNAC2 (17q25.1) / JMJD6 (17q25.1)
VCAN (5q14.2) / ST6GALNAC2 (17q25.1)PRKCA 17q24.2 / ST6GALNAC2 17q25.1PRPSAP1 17q25.1 / ST6GALNAC2 17q25.1
ST6GALNAC2 17q25.1 / JMJD6 17q25.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)ST6GALNAC2   10867
Cards
Entrez_Gene (NCBI)ST6GALNAC2    ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 2
AliasesSAITL1; SIAT7; SIAT7B; SIATL1; 
ST6GalNAII; STHM
GeneCards (Weizmann)ST6GALNAC2
Ensembl hg19 (Hinxton)ENSG00000070731 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000070731 [Gene_View]  ENSG00000070731 [Sequence]  chr17:76565377-76585860 [Contig_View]  ST6GALNAC2 [Vega]
ICGC DataPortalENSG00000070731
TCGA cBioPortalST6GALNAC2
AceView (NCBI)ST6GALNAC2
Genatlas (Paris)ST6GALNAC2
SOURCE (Princeton)ST6GALNAC2
Genetics Home Reference (NIH)ST6GALNAC2
Genomic and cartography
GoldenPath hg38 (UCSC)ST6GALNAC2  -     chr17:76565377-76585860 -  17q25.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ST6GALNAC2  -     17q25.1   [Description]    (hg19-Feb_2009)
GoldenPathST6GALNAC2 - 17q25.1 [CytoView hg19]  ST6GALNAC2 - 17q25.1 [CytoView hg38]
ImmunoBaseENSG00000070731
Genome Data Viewer NCBIST6GALNAC2 [Mapview hg19]  
OMIM610137   
Gene and transcription
Genbank (Entrez)AJ251053 AK127567 AK225943 BC038114 BC040455
RefSeq transcript (Entrez)NM_006456
Consensus coding sequences : CCDS (NCBI)ST6GALNAC2
Gene ExpressionST6GALNAC2 [ NCBI-GEO ]   ST6GALNAC2 [ EBI - ARRAY_EXPRESS ]   ST6GALNAC2 [ SEEK ]   ST6GALNAC2 [ MEM ]
Gene Expression Viewer (FireBrowse)ST6GALNAC2 [ Firebrowse - Broad ]
GenevisibleExpression of ST6GALNAC2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10610
GTEX Portal (Tissue expression)ST6GALNAC2
Human Protein AtlasENSG00000070731-ST6GALNAC2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UJ37   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UJ37  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UJ37
PhosPhoSitePlusQ9UJ37
Domains : Interpro (EBI)Glyco_trans_29    GT29-like_sf    Sialyl_trans   
Domain families : Pfam (Sanger)Glyco_transf_29 (PF00777)   
Domain families : Pfam (NCBI)pfam00777   
Conserved Domain (NCBI)ST6GALNAC2
PDB (RSDB)6APJ    6APL   
PDB Europe6APJ    6APL   
PDB (PDBSum)6APJ    6APL   
PDB (IMB)6APJ    6APL   
Structural Biology KnowledgeBase6APJ    6APL   
SCOP (Structural Classification of Proteins)6APJ    6APL   
CATH (Classification of proteins structures)6APJ    6APL   
SuperfamilyQ9UJ37
AlphaFold pdb e-kbQ9UJ37   
Human Protein Atlas [tissue]ENSG00000070731-ST6GALNAC2 [tissue]
HPRD10231
Protein Interaction databases
DIP (DOE-UCLA)Q9UJ37
IntAct (EBI)Q9UJ37
BioGRIDST6GALNAC2
STRING (EMBL)ST6GALNAC2
ZODIACST6GALNAC2
Ontologies - Pathways
QuickGOQ9UJ37
Ontology : AmiGOGolgi membrane  alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase activity  protein glycosylation  protein O-linked glycosylation  integral component of membrane  O-glycan processing  viral protein processing  protein sialylation  
Ontology : EGO-EBIGolgi membrane  alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase activity  protein glycosylation  protein O-linked glycosylation  integral component of membrane  O-glycan processing  viral protein processing  protein sialylation  
NDEx NetworkST6GALNAC2
Atlas of Cancer Signalling NetworkST6GALNAC2
Wikipedia pathwaysST6GALNAC2
Orthology - Evolution
OrthoDB10610
GeneTree (enSembl)ENSG00000070731
Phylogenetic Trees/Animal Genes : TreeFamST6GALNAC2
Homologs : HomoloGeneST6GALNAC2
Homology/Alignments : Family Browser (UCSC)ST6GALNAC2
Gene fusions - Rearrangements
Fusion : MitelmanPRKCA/ST6GALNAC2 [17q24.2/17q25.1]  
Fusion : MitelmanPRPSAP1/ST6GALNAC2 [17q25.1/17q25.1]  
Fusion : MitelmanST6GALNAC2/JMJD6 [17q25.1/17q25.1]  
Fusion : QuiverST6GALNAC2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerST6GALNAC2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ST6GALNAC2
dbVarST6GALNAC2
ClinVarST6GALNAC2
MonarchST6GALNAC2
1000_GenomesST6GALNAC2 
Exome Variant ServerST6GALNAC2
GNOMAD BrowserENSG00000070731
Varsome BrowserST6GALNAC2
ACMGST6GALNAC2 variants
VarityQ9UJ37
Genomic Variants (DGV)ST6GALNAC2 [DGVbeta]
DECIPHERST6GALNAC2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisST6GALNAC2 
Mutations
ICGC Data PortalST6GALNAC2 
TCGA Data PortalST6GALNAC2 
Broad Tumor PortalST6GALNAC2
OASIS PortalST6GALNAC2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICST6GALNAC2  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DST6GALNAC2
Mutations and Diseases : HGMDST6GALNAC2
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaST6GALNAC2
DgiDB (Drug Gene Interaction Database)ST6GALNAC2
DoCM (Curated mutations)ST6GALNAC2
CIViC (Clinical Interpretations of Variants in Cancer)ST6GALNAC2
Cancer3DST6GALNAC2
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610137   
Orphanet
DisGeNETST6GALNAC2
MedgenST6GALNAC2
Genetic Testing Registry ST6GALNAC2
NextProtQ9UJ37 [Medical]
GENETestsST6GALNAC2
Target ValidationST6GALNAC2
Huge Navigator ST6GALNAC2 [HugePedia]
ClinGenST6GALNAC2
Clinical trials, drugs, therapy
MyCancerGenomeST6GALNAC2
Protein Interactions : CTDST6GALNAC2
Pharm GKB GenePA35769
PharosQ9UJ37
Clinical trialST6GALNAC2
Miscellaneous
canSAR (ICR)ST6GALNAC2
HarmonizomeST6GALNAC2
DataMed IndexST6GALNAC2
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXST6GALNAC2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:33:26 CEST 2021

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