Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ST6GALNAC3 (ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3)

Identity

Alias_namesSIAT7C
sialyltransferase 7 ((alpha-N-acetylneuraminyl-2,3-beta-galactosyl-1,3)-N-acetyl galactosaminide alpha-2,6-sialyltransferase) C
ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3
ST6 GalNAc alpha-2,6-sialyltransferase 3
Other aliasPRO7177
ST6GALNACIII
STY
HGNC (Hugo) ST6GALNAC3
LocusID (NCBI) 256435
Atlas_Id 74272
Location 1p31.1  [Link to chromosome band 1p31]
Location_base_pair Starts at 76074684 and ends at 76577207 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ADAM12 (10q26.2) / ST6GALNAC3 (1p31.1)LPAR3 (1p22.3) / ST6GALNAC3 (1p31.1)MYO10 (5p15.1) / ST6GALNAC3 (1p31.1)
NFIA (1p31.3) / ST6GALNAC3 (1p31.1)PIGK (1p31.1) / ST6GALNAC3 (1p31.1)ST6GALNAC3 (1p31.1) / SEC14L1 (17q25.2)
LPAR3 ST6GALNAC3PIGK ST6GALNAC3MYO10 ST6GALNAC3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ST6GALNAC3   19343
Cards
Entrez_Gene (NCBI)ST6GALNAC3  256435  ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3
AliasesPRO7177; SIAT7C; ST6GALNACIII; STY
GeneCards (Weizmann)ST6GALNAC3
Ensembl hg19 (Hinxton)ENSG00000184005 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000184005 [Gene_View]  chr1:76074684-76577207 [Contig_View]  ST6GALNAC3 [Vega]
ICGC DataPortalENSG00000184005
TCGA cBioPortalST6GALNAC3
AceView (NCBI)ST6GALNAC3
Genatlas (Paris)ST6GALNAC3
WikiGenes256435
SOURCE (Princeton)ST6GALNAC3
Genetics Home Reference (NIH)ST6GALNAC3
Genomic and cartography
GoldenPath hg38 (UCSC)ST6GALNAC3  -     chr1:76074684-76577207 +  1p31.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ST6GALNAC3  -     1p31.1   [Description]    (hg19-Feb_2009)
EnsemblST6GALNAC3 - 1p31.1 [CytoView hg19]  ST6GALNAC3 - 1p31.1 [CytoView hg38]
Mapping of homologs : NCBIST6GALNAC3 [Mapview hg19]  ST6GALNAC3 [Mapview hg38]
OMIM610133   
Gene and transcription
Genbank (Entrez)AJ507291 AK023731 AK091215 AK130749 AK297363
RefSeq transcript (Entrez)NM_001160011 NM_001349105 NM_001349106 NM_001349107 NM_001349108 NM_001349109 NM_001349110 NM_001349111 NM_152996
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ST6GALNAC3
Cluster EST : UnigeneHs.679096 [ NCBI ]
CGAP (NCI)Hs.679096
Alternative Splicing GalleryENSG00000184005
Gene ExpressionST6GALNAC3 [ NCBI-GEO ]   ST6GALNAC3 [ EBI - ARRAY_EXPRESS ]   ST6GALNAC3 [ SEEK ]   ST6GALNAC3 [ MEM ]
Gene Expression Viewer (FireBrowse)ST6GALNAC3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)256435
GTEX Portal (Tissue expression)ST6GALNAC3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NDV1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NDV1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NDV1
Splice isoforms : SwissVarQ8NDV1
Catalytic activity : Enzyme2.4.99.- [ Enzyme-Expasy ]   2.4.99.-2.4.99.- [ IntEnz-EBI ]   2.4.99.- [ BRENDA ]   2.4.99.- [ KEGG ]   
PhosPhoSitePlusQ8NDV1
Domains : Interpro (EBI)Glyco_trans_29   
Domain families : Pfam (Sanger)Glyco_transf_29 (PF00777)   
Domain families : Pfam (NCBI)pfam00777   
Conserved Domain (NCBI)ST6GALNAC3
DMDM Disease mutations256435
Blocks (Seattle)ST6GALNAC3
SuperfamilyQ8NDV1
Human Protein AtlasENSG00000184005
Peptide AtlasQ8NDV1
HPRD15341
IPIIPI00166295   IPI00554523   IPI00910409   IPI01011447   IPI00871952   
Protein Interaction databases
DIP (DOE-UCLA)Q8NDV1
IntAct (EBI)Q8NDV1
FunCoupENSG00000184005
BioGRIDST6GALNAC3
STRING (EMBL)ST6GALNAC3
ZODIACST6GALNAC3
Ontologies - Pathways
QuickGOQ8NDV1
Ontology : AmiGOGolgi membrane  alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase activity  alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase activity  nucleoplasm  glycosylceramide metabolic process  glycosphingolipid metabolic process  sialyltransferase activity  glycoprotein metabolic process  oligosaccharide metabolic process  integral component of membrane  protein N-linked glycosylation via asparagine  sialylation  
Ontology : EGO-EBIGolgi membrane  alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase activity  alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase activity  nucleoplasm  glycosylceramide metabolic process  glycosphingolipid metabolic process  sialyltransferase activity  glycoprotein metabolic process  oligosaccharide metabolic process  integral component of membrane  protein N-linked glycosylation via asparagine  sialylation  
Pathways : KEGGGlycosphingolipid biosynthesis - ganglio series   
NDEx NetworkST6GALNAC3
Atlas of Cancer Signalling NetworkST6GALNAC3
Wikipedia pathwaysST6GALNAC3
Orthology - Evolution
OrthoDB256435
GeneTree (enSembl)ENSG00000184005
Phylogenetic Trees/Animal Genes : TreeFamST6GALNAC3
HOVERGENQ8NDV1
HOGENOMQ8NDV1
Homologs : HomoloGeneST6GALNAC3
Homology/Alignments : Family Browser (UCSC)ST6GALNAC3
Gene fusions - Rearrangements
Fusion: TCGALPAR3 ST6GALNAC3
Fusion: TCGAPIGK ST6GALNAC3
Fusion: TCGAMYO10 ST6GALNAC3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerST6GALNAC3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ST6GALNAC3
dbVarST6GALNAC3
ClinVarST6GALNAC3
1000_GenomesST6GALNAC3 
Exome Variant ServerST6GALNAC3
ExAC (Exome Aggregation Consortium)ST6GALNAC3 (select the gene name)
Genetic variants : HAPMAP256435
Genomic Variants (DGV)ST6GALNAC3 [DGVbeta]
DECIPHERST6GALNAC3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisST6GALNAC3 
Mutations
ICGC Data PortalST6GALNAC3 
TCGA Data PortalST6GALNAC3 
Broad Tumor PortalST6GALNAC3
OASIS PortalST6GALNAC3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICST6GALNAC3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDST6GALNAC3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ST6GALNAC3
DgiDB (Drug Gene Interaction Database)ST6GALNAC3
DoCM (Curated mutations)ST6GALNAC3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ST6GALNAC3 (select a term)
intoGenST6GALNAC3
Cancer3DST6GALNAC3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610133   
Orphanet
MedgenST6GALNAC3
Genetic Testing Registry ST6GALNAC3
NextProtQ8NDV1 [Medical]
TSGene256435
GENETestsST6GALNAC3
Target ValidationST6GALNAC3
Huge Navigator ST6GALNAC3 [HugePedia]
snp3D : Map Gene to Disease256435
BioCentury BCIQST6GALNAC3
ClinGenST6GALNAC3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD256435
Chemical/Pharm GKB GenePA134984080
Clinical trialST6GALNAC3
Miscellaneous
canSAR (ICR)ST6GALNAC3 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineST6GALNAC3
EVEXST6GALNAC3
GoPubMedST6GALNAC3
iHOPST6GALNAC3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:40:33 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.