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ST6GALNAC4 (ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 4)

Identity

Other aliasIV
SIAT3-C
SIAT3C
SIAT7-D
SIAT7D
ST6GALNACIV
ST6GalNAc
HGNC (Hugo) ST6GALNAC4
LocusID (NCBI) 27090
Atlas_Id 56653
Location 9q34.11  [Link to chromosome band 9q34]
Location_base_pair Starts at 127907886 and ends at 127917026 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ST6GALNAC4   17846
Cards
Entrez_Gene (NCBI)ST6GALNAC4  27090  ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 4
AliasesIV; SIAT3-C; SIAT3C; SIAT7-D; 
SIAT7D; ST6GALNACIV; ST6GalNAc
GeneCards (Weizmann)ST6GALNAC4
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr9:127907886-127917026 [Contig_View]  ST6GALNAC4 [Vega]
TCGA cBioPortalST6GALNAC4
AceView (NCBI)ST6GALNAC4
Genatlas (Paris)ST6GALNAC4
WikiGenes27090
SOURCE (Princeton)ST6GALNAC4
Genetics Home Reference (NIH)ST6GALNAC4
Genomic and cartography
GoldenPath hg38 (UCSC)ST6GALNAC4  -     chr9:127907886-127917026 -  9q34.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ST6GALNAC4  -     9q34.11   [Description]    (hg19-Feb_2009)
EnsemblST6GALNAC4 - 9q34.11 [CytoView hg19]  ST6GALNAC4 - 9q34.11 [CytoView hg38]
Mapping of homologs : NCBIST6GALNAC4 [Mapview hg19]  ST6GALNAC4 [Mapview hg38]
OMIM606378   
Gene and transcription
Genbank (Entrez)AB035172 AJ271734 AK000600 AK292049 BC036705
RefSeq transcript (Entrez)NM_014403 NM_175039 NM_175040
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ST6GALNAC4
Cluster EST : UnigeneHs.709827 [ NCBI ]
CGAP (NCI)Hs.709827
Gene ExpressionST6GALNAC4 [ NCBI-GEO ]   ST6GALNAC4 [ EBI - ARRAY_EXPRESS ]   ST6GALNAC4 [ SEEK ]   ST6GALNAC4 [ MEM ]
Gene Expression Viewer (FireBrowse)ST6GALNAC4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)27090
GTEX Portal (Tissue expression)ST6GALNAC4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H4F1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H4F1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H4F1
Splice isoforms : SwissVarQ9H4F1
Catalytic activity : Enzyme2.4.99.7 [ Enzyme-Expasy ]   2.4.99.72.4.99.7 [ IntEnz-EBI ]   2.4.99.7 [ BRENDA ]   2.4.99.7 [ KEGG ]   
PhosPhoSitePlusQ9H4F1
Domains : Interpro (EBI)Glyco_trans_29   
Domain families : Pfam (Sanger)Glyco_transf_29 (PF00777)   
Domain families : Pfam (NCBI)pfam00777   
Conserved Domain (NCBI)ST6GALNAC4
DMDM Disease mutations27090
Blocks (Seattle)ST6GALNAC4
SuperfamilyQ9H4F1
Peptide AtlasQ9H4F1
IPIIPI00156526   IPI00333213   
Protein Interaction databases
DIP (DOE-UCLA)Q9H4F1
IntAct (EBI)Q9H4F1
BioGRIDST6GALNAC4
STRING (EMBL)ST6GALNAC4
ZODIACST6GALNAC4
Ontologies - Pathways
QuickGOQ9H4F1
Ontology : AmiGOGolgi membrane  alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase activity  alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase activity  glycolipid metabolic process  sialyltransferase activity  oligosaccharide metabolic process  integral component of membrane  O-glycan processing  protein N-linked glycosylation via asparagine  (alpha-N-acetylneuraminyl-2,3-beta-galactosyl-1,3)-N-acetyl-galactosaminide 6-alpha-sialyltransferase activity  sialylation  
Ontology : EGO-EBIGolgi membrane  alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase activity  alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase activity  glycolipid metabolic process  sialyltransferase activity  oligosaccharide metabolic process  integral component of membrane  O-glycan processing  protein N-linked glycosylation via asparagine  (alpha-N-acetylneuraminyl-2,3-beta-galactosyl-1,3)-N-acetyl-galactosaminide 6-alpha-sialyltransferase activity  sialylation  
Pathways : KEGGGlycosphingolipid biosynthesis - ganglio series   
NDEx NetworkST6GALNAC4
Atlas of Cancer Signalling NetworkST6GALNAC4
Wikipedia pathwaysST6GALNAC4
Orthology - Evolution
OrthoDB27090
Phylogenetic Trees/Animal Genes : TreeFamST6GALNAC4
HOVERGENQ9H4F1
HOGENOMQ9H4F1
Homologs : HomoloGeneST6GALNAC4
Homology/Alignments : Family Browser (UCSC)ST6GALNAC4
Gene fusions - Rearrangements
Tumor Fusion PortalST6GALNAC4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerST6GALNAC4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ST6GALNAC4
dbVarST6GALNAC4
ClinVarST6GALNAC4
1000_GenomesST6GALNAC4 
Exome Variant ServerST6GALNAC4
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP27090
Genomic Variants (DGV)ST6GALNAC4 [DGVbeta]
DECIPHERST6GALNAC4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisST6GALNAC4 
Mutations
ICGC Data PortalST6GALNAC4 
TCGA Data PortalST6GALNAC4 
Broad Tumor PortalST6GALNAC4
OASIS PortalST6GALNAC4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICST6GALNAC4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDST6GALNAC4
BioMutasearch ST6GALNAC4
DgiDB (Drug Gene Interaction Database)ST6GALNAC4
DoCM (Curated mutations)ST6GALNAC4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ST6GALNAC4 (select a term)
intoGenST6GALNAC4
Cancer3DST6GALNAC4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606378   
Orphanet
DisGeNETST6GALNAC4
MedgenST6GALNAC4
Genetic Testing Registry ST6GALNAC4
NextProtQ9H4F1 [Medical]
TSGene27090
GENETestsST6GALNAC4
Target ValidationST6GALNAC4
Huge Navigator ST6GALNAC4 [HugePedia]
snp3D : Map Gene to Disease27090
BioCentury BCIQST6GALNAC4
ClinGenST6GALNAC4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD27090
Chemical/Pharm GKB GenePA38250
Clinical trialST6GALNAC4
Miscellaneous
canSAR (ICR)ST6GALNAC4 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineST6GALNAC4
EVEXST6GALNAC4
GoPubMedST6GALNAC4
iHOPST6GALNAC4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:36:50 CET 2017

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