Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ST6GALNAC5 (ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 5)

Identity

Alias_namesSIAT7E
sialyltransferase 7 ((alpha-N-acetylneuraminyl-2,3-beta-galactosyl-1,3)-N-acetyl galactosaminide alpha-2,6-sialyltransferase) E
ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5
ST6 GalNAc alpha-2,6-sialyltransferase 5
Alias_symbol (synonym)MGC3184
ST6GalNAcV
Other aliasSIAT7-E
HGNC (Hugo) ST6GALNAC5
LocusID (NCBI) 81849
Atlas_Id 74274
Location 1p31.1  [Link to chromosome band 1p31]
Location_base_pair Starts at 76867408 and ends at 77067538 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
GSK3B (3q13.33) / ST6GALNAC5 (1p31.1)PATJ (1p31.3) / ST6GALNAC5 (1p31.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ST6GALNAC5   19342
Cards
Entrez_Gene (NCBI)ST6GALNAC5  81849  ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 5
AliasesSIAT7-E; SIAT7E; ST6GalNAcV
GeneCards (Weizmann)ST6GALNAC5
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr1:76867408-77067538 [Contig_View]  ST6GALNAC5 [Vega]
TCGA cBioPortalST6GALNAC5
AceView (NCBI)ST6GALNAC5
Genatlas (Paris)ST6GALNAC5
WikiGenes81849
SOURCE (Princeton)ST6GALNAC5
Genetics Home Reference (NIH)ST6GALNAC5
Genomic and cartography
GoldenPath hg38 (UCSC)ST6GALNAC5  -     chr1:76867408-77067538 +  1p31.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ST6GALNAC5  -     1p31.1   [Description]    (hg19-Feb_2009)
EnsemblST6GALNAC5 - 1p31.1 [CytoView hg19]  ST6GALNAC5 - 1p31.1 [CytoView hg38]
Mapping of homologs : NCBIST6GALNAC5 [Mapview hg19]  ST6GALNAC5 [Mapview hg38]
OMIM610134   
Gene and transcription
Genbank (Entrez)AF131837 AJ507292 AK056241 AK095758 AK295019
RefSeq transcript (Entrez)NM_001320273 NM_001320274 NM_030965
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ST6GALNAC5
Cluster EST : UnigeneHs.303609 [ NCBI ]
CGAP (NCI)Hs.303609
Gene ExpressionST6GALNAC5 [ NCBI-GEO ]   ST6GALNAC5 [ EBI - ARRAY_EXPRESS ]   ST6GALNAC5 [ SEEK ]   ST6GALNAC5 [ MEM ]
Gene Expression Viewer (FireBrowse)ST6GALNAC5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)81849
GTEX Portal (Tissue expression)ST6GALNAC5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BVH7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BVH7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BVH7
Splice isoforms : SwissVarQ9BVH7
Catalytic activity : Enzyme2.4.99.- [ Enzyme-Expasy ]   2.4.99.-2.4.99.- [ IntEnz-EBI ]   2.4.99.- [ BRENDA ]   2.4.99.- [ KEGG ]   
PhosPhoSitePlusQ9BVH7
Domains : Interpro (EBI)Glyco_trans_29   
Domain families : Pfam (Sanger)Glyco_transf_29 (PF00777)   
Domain families : Pfam (NCBI)pfam00777   
Conserved Domain (NCBI)ST6GALNAC5
DMDM Disease mutations81849
Blocks (Seattle)ST6GALNAC5
SuperfamilyQ9BVH7
Peptide AtlasQ9BVH7
HPRD15342
IPIIPI00008913   IPI01015253   IPI00909732   IPI00902649   
Protein Interaction databases
DIP (DOE-UCLA)Q9BVH7
IntAct (EBI)Q9BVH7
BioGRIDST6GALNAC5
STRING (EMBL)ST6GALNAC5
ZODIACST6GALNAC5
Ontologies - Pathways
QuickGOQ9BVH7
Ontology : AmiGOGolgi membrane  alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase activity  alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase activity  alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase activity  glycosphingolipid biosynthetic process  sialyltransferase activity  oligosaccharide metabolic process  oligosaccharide biosynthetic process  integral component of membrane  protein N-linked glycosylation via asparagine  sialylation  
Ontology : EGO-EBIGolgi membrane  alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase activity  alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase activity  alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase activity  glycosphingolipid biosynthetic process  sialyltransferase activity  oligosaccharide metabolic process  oligosaccharide biosynthetic process  integral component of membrane  protein N-linked glycosylation via asparagine  sialylation  
Pathways : KEGGGlycosphingolipid biosynthesis - ganglio series   
NDEx NetworkST6GALNAC5
Atlas of Cancer Signalling NetworkST6GALNAC5
Wikipedia pathwaysST6GALNAC5
Orthology - Evolution
OrthoDB81849
Phylogenetic Trees/Animal Genes : TreeFamST6GALNAC5
HOVERGENQ9BVH7
HOGENOMQ9BVH7
Homologs : HomoloGeneST6GALNAC5
Homology/Alignments : Family Browser (UCSC)ST6GALNAC5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerST6GALNAC5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ST6GALNAC5
dbVarST6GALNAC5
ClinVarST6GALNAC5
1000_GenomesST6GALNAC5 
Exome Variant ServerST6GALNAC5
ExAC (Exome Aggregation Consortium)ST6GALNAC5 (select the gene name)
Genetic variants : HAPMAP81849
Genomic Variants (DGV)ST6GALNAC5 [DGVbeta]
DECIPHERST6GALNAC5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisST6GALNAC5 
Mutations
ICGC Data PortalST6GALNAC5 
TCGA Data PortalST6GALNAC5 
Broad Tumor PortalST6GALNAC5
OASIS PortalST6GALNAC5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICST6GALNAC5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDST6GALNAC5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ST6GALNAC5
DgiDB (Drug Gene Interaction Database)ST6GALNAC5
DoCM (Curated mutations)ST6GALNAC5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ST6GALNAC5 (select a term)
intoGenST6GALNAC5
Cancer3DST6GALNAC5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610134   
Orphanet
MedgenST6GALNAC5
Genetic Testing Registry ST6GALNAC5
NextProtQ9BVH7 [Medical]
TSGene81849
GENETestsST6GALNAC5
Target ValidationST6GALNAC5
Huge Navigator ST6GALNAC5 [HugePedia]
snp3D : Map Gene to Disease81849
BioCentury BCIQST6GALNAC5
ClinGenST6GALNAC5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD81849
Chemical/Pharm GKB GenePA134924485
Clinical trialST6GALNAC5
Miscellaneous
canSAR (ICR)ST6GALNAC5 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineST6GALNAC5
EVEXST6GALNAC5
GoPubMedST6GALNAC5
iHOPST6GALNAC5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:44:16 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.