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ST6GALNAC6 (ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6)

Identity

Alias_namesSIAT7F
sialytransferase 7 ((alpha-N-acetylneuraminyl 2,3-betagalactosyl-1,3)-N-acetyl galactosaminide alpha-2,6-sialytransferase) F
ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6
ST6 GalNAc alpha-2,6-sialyltransferase 6
Alias_symbol (synonym)ST6GALNACVI
Other aliasSIAT7-F
HGNC (Hugo) ST6GALNAC6
LocusID (NCBI) 30815
Atlas_Id 74275
Location 9q34.11  [Link to chromosome band 9q34]
Location_base_pair Starts at 130647600 and ends at 130661927 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
SHISA5 (3p21.31) / ST6GALNAC6 (9q34.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ST6GALNAC6   23364
Cards
Entrez_Gene (NCBI)ST6GALNAC6  30815  ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6
AliasesSIAT7-F; SIAT7F; ST6GALNACVI
GeneCards (Weizmann)ST6GALNAC6
Ensembl hg19 (Hinxton)ENSG00000160408 [Gene_View]  chr9:130647600-130661927 [Contig_View]  ST6GALNAC6 [Vega]
Ensembl hg38 (Hinxton)ENSG00000160408 [Gene_View]  chr9:130647600-130661927 [Contig_View]  ST6GALNAC6 [Vega]
ICGC DataPortalENSG00000160408
TCGA cBioPortalST6GALNAC6
AceView (NCBI)ST6GALNAC6
Genatlas (Paris)ST6GALNAC6
WikiGenes30815
SOURCE (Princeton)ST6GALNAC6
Genetics Home Reference (NIH)ST6GALNAC6
Genomic and cartography
GoldenPath hg19 (UCSC)ST6GALNAC6  -     chr9:130647600-130661927 -  9q34.11   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ST6GALNAC6  -     9q34.11   [Description]    (hg38-Dec_2013)
EnsemblST6GALNAC6 - 9q34.11 [CytoView hg19]  ST6GALNAC6 - 9q34.11 [CytoView hg38]
Mapping of homologs : NCBIST6GALNAC6 [Mapview hg19]  ST6GALNAC6 [Mapview hg38]
OMIM610135   
Gene and transcription
Genbank (Entrez)AB035173 AJ507293 AK023900 AK025959 AK057100
RefSeq transcript (Entrez)NM_001286999 NM_001287000 NM_001287001 NM_001287002 NM_001287003 NM_013443
RefSeq genomic (Entrez)NC_000009 NC_018920 NT_008470 NW_004929366
Consensus coding sequences : CCDS (NCBI)ST6GALNAC6
Cluster EST : UnigeneHs.109672 [ NCBI ]
CGAP (NCI)Hs.109672
Alternative Splicing GalleryENSG00000160408
Gene ExpressionST6GALNAC6 [ NCBI-GEO ]   ST6GALNAC6 [ EBI - ARRAY_EXPRESS ]   ST6GALNAC6 [ SEEK ]   ST6GALNAC6 [ MEM ]
Gene Expression Viewer (FireBrowse)ST6GALNAC6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)30815
GTEX Portal (Tissue expression)ST6GALNAC6
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ969X2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ969X2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ969X2
Splice isoforms : SwissVarQ969X2
Catalytic activity : Enzyme2.4.99.- [ Enzyme-Expasy ]   2.4.99.-2.4.99.- [ IntEnz-EBI ]   2.4.99.- [ BRENDA ]   2.4.99.- [ KEGG ]   
PhosPhoSitePlusQ969X2
Domains : Interpro (EBI)Glyco_trans_29   
Domain families : Pfam (Sanger)Glyco_transf_29 (PF00777)   
Domain families : Pfam (NCBI)pfam00777   
Conserved Domain (NCBI)ST6GALNAC6
DMDM Disease mutations30815
Blocks (Seattle)ST6GALNAC6
SuperfamilyQ969X2
Human Protein AtlasENSG00000160408
Peptide AtlasQ969X2
HPRD18111
IPIIPI00186782   IPI00645541   IPI00910296   IPI00478033   IPI00644647   
Protein Interaction databases
DIP (DOE-UCLA)Q969X2
IntAct (EBI)Q969X2
FunCoupENSG00000160408
BioGRIDST6GALNAC6
STRING (EMBL)ST6GALNAC6
ZODIACST6GALNAC6
Ontologies - Pathways
QuickGOQ969X2
Ontology : AmiGOGolgi membrane  ganglioside biosynthetic process  alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase activity  cytoplasm  plasma membrane  dolichol-linked oligosaccharide biosynthetic process  glycosylceramide metabolic process  glycosphingolipid metabolic process  sialyltransferase activity  sialyltransferase activity  glycoprotein metabolic process  oligosaccharide biosynthetic process  cell-cell recognition  integral component of membrane  protein N-linked glycosylation via asparagine  post-translational protein modification  cellular protein metabolic process  sialylation  sialylation  sialylation  
Ontology : EGO-EBIGolgi membrane  ganglioside biosynthetic process  alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase activity  cytoplasm  plasma membrane  dolichol-linked oligosaccharide biosynthetic process  glycosylceramide metabolic process  glycosphingolipid metabolic process  sialyltransferase activity  sialyltransferase activity  glycoprotein metabolic process  oligosaccharide biosynthetic process  cell-cell recognition  integral component of membrane  protein N-linked glycosylation via asparagine  post-translational protein modification  cellular protein metabolic process  sialylation  sialylation  sialylation  
Pathways : KEGGGlycosphingolipid biosynthesis - ganglio series   
NDEx NetworkST6GALNAC6
Atlas of Cancer Signalling NetworkST6GALNAC6
Wikipedia pathwaysST6GALNAC6
Orthology - Evolution
OrthoDB30815
GeneTree (enSembl)ENSG00000160408
Phylogenetic Trees/Animal Genes : TreeFamST6GALNAC6
HOVERGENQ969X2
HOGENOMQ969X2
Homologs : HomoloGeneST6GALNAC6
Homology/Alignments : Family Browser (UCSC)ST6GALNAC6
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerST6GALNAC6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ST6GALNAC6
dbVarST6GALNAC6
ClinVarST6GALNAC6
1000_GenomesST6GALNAC6 
Exome Variant ServerST6GALNAC6
ExAC (Exome Aggregation Consortium)ST6GALNAC6 (select the gene name)
Genetic variants : HAPMAP30815
Genomic Variants (DGV)ST6GALNAC6 [DGVbeta]
DECIPHER (Syndromes)9:130647600-130661927  ENSG00000160408
CONAN: Copy Number AnalysisST6GALNAC6 
Mutations
ICGC Data PortalST6GALNAC6 
TCGA Data PortalST6GALNAC6 
Broad Tumor PortalST6GALNAC6
OASIS PortalST6GALNAC6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICST6GALNAC6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDST6GALNAC6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ST6GALNAC6
DgiDB (Drug Gene Interaction Database)ST6GALNAC6
DoCM (Curated mutations)ST6GALNAC6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ST6GALNAC6 (select a term)
intoGenST6GALNAC6
Cancer3DST6GALNAC6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610135   
Orphanet
MedgenST6GALNAC6
Genetic Testing Registry ST6GALNAC6
NextProtQ969X2 [Medical]
TSGene30815
GENETestsST6GALNAC6
Huge Navigator ST6GALNAC6 [HugePedia]
snp3D : Map Gene to Disease30815
BioCentury BCIQST6GALNAC6
ClinGenST6GALNAC6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD30815
Chemical/Pharm GKB GenePA134891331
Clinical trialST6GALNAC6
Miscellaneous
canSAR (ICR)ST6GALNAC6 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineST6GALNAC6
EVEXST6GALNAC6
GoPubMedST6GALNAC6
iHOPST6GALNAC6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:46:49 CET 2017

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