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ST7 (suppression of tumorigenicity 7)

Identity

Alias_namesFAM4A1
Alias_symbol (synonym)TSG7
SEN4
ETS7q
HELG
RAY1
FAM4A
HGNC (Hugo) ST7
LocusID (NCBI) 7982
Atlas_Id 42919
Location 7q31.2  [Link to chromosome band 7q31]
Location_base_pair Starts at 116593381 and ends at 116870075 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
GAB2 (11q14.1) / ST7 (7q31.2)MMP2 (16q12.2) / ST7 (7q31.2)NBPF9 (1q21.1) / ST7 (7q31.2)
ST14 (11q24.3) / ST7 (7q31.2)ST7 (7q31.2) / ASZ1 (7q31.2)ST7 (7q31.2) / CAPZA2 (7q31.2)
ST7 (7q31.2) / CAV1 (7q31.2)ST7 (7q31.2) / KIAA1462 (10p11.23)ST7 (7q31.2) / MET (7q31.2)
ST7 (7q31.2) / PRKAG2 (7q36.1)ST7 (7q31.2) / SREBF1 (17p11.2)ST7 (7q31.2) / TRIM24 (7q33)
ST7 (7q31.2) / UBE2E2 (3p24.3)ST14 11q24.3 / ST7 7q31.2ST7 7q31.2 / ASZ1 7q31.2
ST7 7q31.2 / CAPZA2 7q31.2ST7 7q31.2 / CAV1 7q31.2ST7 7q31.2 / MET 7q31.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ST7   11351
Cards
Entrez_Gene (NCBI)ST7  7982  suppression of tumorigenicity 7
AliasesETS7q; FAM4A; FAM4A1; HELG; 
RAY1; SEN4; TSG7
GeneCards (Weizmann)ST7
Ensembl hg19 (Hinxton)ENSG00000004866 [Gene_View]  chr7:116593381-116870075 [Contig_View]  ST7 [Vega]
Ensembl hg38 (Hinxton)ENSG00000004866 [Gene_View]  chr7:116593381-116870075 [Contig_View]  ST7 [Vega]
ICGC DataPortalENSG00000004866
TCGA cBioPortalST7
AceView (NCBI)ST7
Genatlas (Paris)ST7
WikiGenes7982
SOURCE (Princeton)ST7
Genetics Home Reference (NIH)ST7
Genomic and cartography
GoldenPath hg19 (UCSC)ST7  -     chr7:116593381-116870075 +  7q31.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ST7  -     7q31.2   [Description]    (hg38-Dec_2013)
EnsemblST7 - 7q31.2 [CytoView hg19]  ST7 - 7q31.2 [CytoView hg38]
Mapping of homologs : NCBIST7 [Mapview hg19]  ST7 [Mapview hg38]
OMIM600833   
Gene and transcription
Genbank (Entrez)AF234882 AF234883 AF415174 AJ277291 AK093212
RefSeq transcript (Entrez)NM_018412 NM_021908
RefSeq genomic (Entrez)NC_000007 NC_018918 NT_007933 NW_004929332
Consensus coding sequences : CCDS (NCBI)ST7
Cluster EST : UnigeneHs.368131 [ NCBI ]
CGAP (NCI)Hs.368131
Alternative Splicing GalleryENSG00000004866
Gene ExpressionST7 [ NCBI-GEO ]   ST7 [ EBI - ARRAY_EXPRESS ]   ST7 [ SEEK ]   ST7 [ MEM ]
Gene Expression Viewer (FireBrowse)ST7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7982
GTEX Portal (Tissue expression)ST7
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NRC1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NRC1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NRC1
Splice isoforms : SwissVarQ9NRC1
PhosPhoSitePlusQ9NRC1
Domains : Interpro (EBI)ST7    TPR-like_helical_dom   
Domain families : Pfam (Sanger)ST7 (PF04184)   
Domain families : Pfam (NCBI)pfam04184   
Conserved Domain (NCBI)ST7
DMDM Disease mutations7982
Blocks (Seattle)ST7
SuperfamilyQ9NRC1
Human Protein AtlasENSG00000004866
Peptide AtlasQ9NRC1
HPRD09015
IPIIPI00030166   IPI00299760   IPI00895813   IPI00657755   IPI00922544   IPI00658129   IPI00902931   IPI00005806   IPI00657897   IPI00657867   IPI00852882   IPI00852683   IPI00852755   IPI00853616   IPI00879078   IPI00878915   IPI00878525   IPI00894453   IPI00893202   IPI00925432   IPI01012865   IPI00946449   IPI01011888   
Protein Interaction databases
DIP (DOE-UCLA)Q9NRC1
IntAct (EBI)Q9NRC1
FunCoupENSG00000004866
BioGRIDST7
STRING (EMBL)ST7
ZODIACST7
Ontologies - Pathways
QuickGOQ9NRC1
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkST7
Atlas of Cancer Signalling NetworkST7
Wikipedia pathwaysST7
Orthology - Evolution
OrthoDB7982
GeneTree (enSembl)ENSG00000004866
Phylogenetic Trees/Animal Genes : TreeFamST7
HOVERGENQ9NRC1
HOGENOMQ9NRC1
Homologs : HomoloGeneST7
Homology/Alignments : Family Browser (UCSC)ST7
Gene fusions - Rearrangements
Fusion : MitelmanST14/ST7 [11q24.3/7q31.2]  [t(7;11)(q31;q24)]  
Fusion : MitelmanST7/ASZ1 [7q31.2/7q31.2]  [t(7;7)(q31;q31)]  
Fusion : MitelmanST7/CAPZA2 [7q31.2/7q31.2]  [t(7;7)(q31;q31)]  
Fusion : MitelmanST7/CAV1 [7q31.2/7q31.2]  [t(7;7)(q31;q31)]  
Fusion : MitelmanST7/MET [7q31.2/7q31.2]  [t(7;7)(q31;q31)]  
Fusion : MitelmanST7/PRKAG2 [7q31.2/7q36.1]  [t(7;7)(q31;q36)]  
Fusion: TCGAST14 11q24.3 ST7 7q31.2 BRCA
Fusion: TCGAST7 7q31.2 ASZ1 7q31.2 LUAD
Fusion: TCGAST7 7q31.2 CAPZA2 7q31.2 PRAD
Fusion: TCGAST7 7q31.2 CAV1 7q31.2 GBM
Fusion: TCGAST7 7q31.2 MET 7q31.2 LGG LUAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerST7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ST7
dbVarST7
ClinVarST7
1000_GenomesST7 
Exome Variant ServerST7
ExAC (Exome Aggregation Consortium)ST7 (select the gene name)
Genetic variants : HAPMAP7982
Genomic Variants (DGV)ST7 [DGVbeta]
DECIPHER (Syndromes)7:116593381-116870075  ENSG00000004866
CONAN: Copy Number AnalysisST7 
Mutations
ICGC Data PortalST7 
TCGA Data PortalST7 
Broad Tumor PortalST7
OASIS PortalST7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICST7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDST7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ST7
DgiDB (Drug Gene Interaction Database)ST7
DoCM (Curated mutations)ST7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ST7 (select a term)
intoGenST7
Cancer3DST7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM600833   
Orphanet
MedgenST7
Genetic Testing Registry ST7
NextProtQ9NRC1 [Medical]
TSGene7982
GENETestsST7
Huge Navigator ST7 [HugePedia]
snp3D : Map Gene to Disease7982
BioCentury BCIQST7
ClinGenST7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7982
Chemical/Pharm GKB GenePA36173
Clinical trialST7
Miscellaneous
canSAR (ICR)ST7 (select the gene name)
Probes
Litterature
PubMed32 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineST7
EVEXST7
GoPubMedST7
iHOPST7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Nov 18 19:52:46 CET 2016

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