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ST7L (suppression of tumorigenicity 7 like)

Identity

Alias_symbol (synonym)FLJ20284
STLR
ST7R
FAM4B
Other alias
HGNC (Hugo) ST7L
LocusID (NCBI) 54879
Atlas_Id 42425
Location 1p13.2  [Link to chromosome band 1p13]
Location_base_pair Starts at 112523519 and ends at 112619139 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CDC27 (17q21.32) / ST7L (1p13.2)ST7L (1p13.2) / MYO5A (15q21.2)ST7L (1p13.2) / PRPF6 (20q13.33)
CDC27 17q21.32 / ST7L 1p13.2ST7L 1p13.2 / PRPF6 20q13.33

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ST7L   18441
Cards
Entrez_Gene (NCBI)ST7L  54879  suppression of tumorigenicity 7 like
AliasesFAM4B; ST7R; STLR
GeneCards (Weizmann)ST7L
Ensembl hg19 (Hinxton)ENSG00000007341 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000007341 [Gene_View]  chr1:112523519-112619139 [Contig_View]  ST7L [Vega]
ICGC DataPortalENSG00000007341
TCGA cBioPortalST7L
AceView (NCBI)ST7L
Genatlas (Paris)ST7L
WikiGenes54879
SOURCE (Princeton)ST7L
Genetics Home Reference (NIH)ST7L
Genomic and cartography
GoldenPath hg38 (UCSC)ST7L  -     chr1:112523519-112619139 -  1p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ST7L  -     1p13.2   [Description]    (hg19-Feb_2009)
EnsemblST7L - 1p13.2 [CytoView hg19]  ST7L - 1p13.2 [CytoView hg38]
Mapping of homologs : NCBIST7L [Mapview hg19]  ST7L [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB081317 AB081318 AB081319 AB081320 AK000291
RefSeq transcript (Entrez)NM_001308264 NM_017744 NM_138727 NM_138728 NM_138729 NM_198327 NM_198328
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ST7L
Cluster EST : UnigeneHs.201921 [ NCBI ]
CGAP (NCI)Hs.201921
Alternative Splicing GalleryENSG00000007341
Gene ExpressionST7L [ NCBI-GEO ]   ST7L [ EBI - ARRAY_EXPRESS ]   ST7L [ SEEK ]   ST7L [ MEM ]
Gene Expression Viewer (FireBrowse)ST7L [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54879
GTEX Portal (Tissue expression)ST7L
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TDW4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TDW4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TDW4
Splice isoforms : SwissVarQ8TDW4
PhosPhoSitePlusQ8TDW4
Domains : Interpro (EBI)ST7    TPR-like_helical_dom   
Domain families : Pfam (Sanger)ST7 (PF04184)   
Domain families : Pfam (NCBI)pfam04184   
Conserved Domain (NCBI)ST7L
DMDM Disease mutations54879
Blocks (Seattle)ST7L
SuperfamilyQ8TDW4
Human Protein AtlasENSG00000007341
Peptide AtlasQ8TDW4
HPRD18112
IPIIPI00218412   IPI00152643   IPI00160341   IPI00642348   IPI00160342   IPI00642794   IPI00383578   IPI00643445   IPI00647607   IPI00953147   IPI00922005   IPI00513874   
Protein Interaction databases
DIP (DOE-UCLA)Q8TDW4
IntAct (EBI)Q8TDW4
FunCoupENSG00000007341
BioGRIDST7L
STRING (EMBL)ST7L
ZODIACST7L
Ontologies - Pathways
QuickGOQ8TDW4
Ontology : AmiGOintegral component of membrane  negative regulation of cell growth  
Ontology : EGO-EBIintegral component of membrane  negative regulation of cell growth  
NDEx NetworkST7L
Atlas of Cancer Signalling NetworkST7L
Wikipedia pathwaysST7L
Orthology - Evolution
OrthoDB54879
GeneTree (enSembl)ENSG00000007341
Phylogenetic Trees/Animal Genes : TreeFamST7L
HOVERGENQ8TDW4
HOGENOMQ8TDW4
Homologs : HomoloGeneST7L
Homology/Alignments : Family Browser (UCSC)ST7L
Gene fusions - Rearrangements
Fusion : MitelmanCDC27/ST7L [17q21.32/1p13.2]  [t(1;17)(p13;q21)]  
Fusion : MitelmanST7L/PRPF6 [1p13.2/20q13.33]  [t(1;20)(p13;q13)]  
Fusion: TCGACDC27 17q21.32 ST7L 1p13.2 BRCA
Fusion: TCGAST7L 1p13.2 PRPF6 20q13.33 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerST7L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ST7L
dbVarST7L
ClinVarST7L
1000_GenomesST7L 
Exome Variant ServerST7L
ExAC (Exome Aggregation Consortium)ST7L (select the gene name)
Genetic variants : HAPMAP54879
Genomic Variants (DGV)ST7L [DGVbeta]
DECIPHERST7L [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisST7L 
Mutations
ICGC Data PortalST7L 
TCGA Data PortalST7L 
Broad Tumor PortalST7L
OASIS PortalST7L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICST7L  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDST7L
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ST7L
DgiDB (Drug Gene Interaction Database)ST7L
DoCM (Curated mutations)ST7L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ST7L (select a term)
intoGenST7L
Cancer3DST7L(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenST7L
Genetic Testing Registry ST7L
NextProtQ8TDW4 [Medical]
TSGene54879
GENETestsST7L
Target ValidationST7L
Huge Navigator ST7L [HugePedia]
snp3D : Map Gene to Disease54879
BioCentury BCIQST7L
ClinGenST7L
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54879
Chemical/Pharm GKB GenePA38331
Clinical trialST7L
Miscellaneous
canSAR (ICR)ST7L (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineST7L
EVEXST7L
GoPubMedST7L
iHOPST7L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 17:15:53 CEST 2017

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