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STAC (SH3 and cysteine rich domain)

Identity

Alias_namessrc homology three (SH3) and cysteine rich domain
Alias_symbol (synonym)STAC1
Other alias
HGNC (Hugo) STAC
LocusID (NCBI) 6769
Atlas_Id 74284
Location 3p22.3  [Link to chromosome band 3p22]
Location_base_pair Starts at 36380487 and ends at 36548006 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)STAC   11353
Cards
Entrez_Gene (NCBI)STAC  6769  SH3 and cysteine rich domain
AliasesSTAC1
GeneCards (Weizmann)STAC
Ensembl hg19 (Hinxton)ENSG00000144681 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000144681 [Gene_View]  chr3:36380487-36548006 [Contig_View]  STAC [Vega]
ICGC DataPortalENSG00000144681
TCGA cBioPortalSTAC
AceView (NCBI)STAC
Genatlas (Paris)STAC
WikiGenes6769
SOURCE (Princeton)STAC
Genetics Home Reference (NIH)STAC
Genomic and cartography
GoldenPath hg38 (UCSC)STAC  -     chr3:36380487-36548006 +  3p22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)STAC  -     3p22.3   [Description]    (hg19-Feb_2009)
EnsemblSTAC - 3p22.3 [CytoView hg19]  STAC - 3p22.3 [CytoView hg38]
Mapping of homologs : NCBISTAC [Mapview hg19]  STAC [Mapview hg38]
OMIM602317   
Gene and transcription
Genbank (Entrez)AK056893 AK299160 AK302697 AK310425 AK313493
RefSeq transcript (Entrez)NM_001292049 NM_003149
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)STAC
Cluster EST : UnigeneHs.56045 [ NCBI ]
CGAP (NCI)Hs.56045
Alternative Splicing GalleryENSG00000144681
Gene ExpressionSTAC [ NCBI-GEO ]   STAC [ EBI - ARRAY_EXPRESS ]   STAC [ SEEK ]   STAC [ MEM ]
Gene Expression Viewer (FireBrowse)STAC [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6769
GTEX Portal (Tissue expression)STAC
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ99469   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ99469  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ99469
Splice isoforms : SwissVarQ99469
PhosPhoSitePlusQ99469
Domaine pattern : Prosite (Expaxy)SH3 (PS50002)    ZF_DAG_PE_1 (PS00479)    ZF_DAG_PE_2 (PS50081)   
Domains : Interpro (EBI)PE/DAG-bd    SH3_domain    Spectrin_alpha_SH3   
Domain families : Pfam (Sanger)C1_1 (PF00130)    SH3_1 (PF00018)   
Domain families : Pfam (NCBI)pfam00130    pfam00018   
Domain families : Smart (EMBL)C1 (SM00109)  SH3 (SM00326)  
Conserved Domain (NCBI)STAC
DMDM Disease mutations6769
Blocks (Seattle)STAC
PDB (SRS)2DL4   
PDB (PDBSum)2DL4   
PDB (IMB)2DL4   
PDB (RSDB)2DL4   
Structural Biology KnowledgeBase2DL4   
SCOP (Structural Classification of Proteins)2DL4   
CATH (Classification of proteins structures)2DL4   
SuperfamilyQ99469
Human Protein AtlasENSG00000144681
Peptide AtlasQ99469
HPRD11890
IPIIPI00015342   IPI01011360   IPI00921033   IPI00792438   IPI00927680   IPI00925269   
Protein Interaction databases
DIP (DOE-UCLA)Q99469
IntAct (EBI)Q99469
FunCoupENSG00000144681
BioGRIDSTAC
STRING (EMBL)STAC
ZODIACSTAC
Ontologies - Pathways
QuickGOQ99469
Ontology : AmiGOprotein binding  cytosol  muscle contraction  signal transduction  T-tubule  cellular response to heat  intracellular signal transduction  metal ion binding  regulation of voltage-gated calcium channel activity  
Ontology : EGO-EBIprotein binding  cytosol  muscle contraction  signal transduction  T-tubule  cellular response to heat  intracellular signal transduction  metal ion binding  regulation of voltage-gated calcium channel activity  
NDEx NetworkSTAC
Atlas of Cancer Signalling NetworkSTAC
Wikipedia pathwaysSTAC
Orthology - Evolution
OrthoDB6769
GeneTree (enSembl)ENSG00000144681
Phylogenetic Trees/Animal Genes : TreeFamSTAC
HOVERGENQ99469
HOGENOMQ99469
Homologs : HomoloGeneSTAC
Homology/Alignments : Family Browser (UCSC)STAC
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSTAC [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)STAC
dbVarSTAC
ClinVarSTAC
1000_GenomesSTAC 
Exome Variant ServerSTAC
ExAC (Exome Aggregation Consortium)STAC (select the gene name)
Genetic variants : HAPMAP6769
Genomic Variants (DGV)STAC [DGVbeta]
DECIPHERSTAC [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSTAC 
Mutations
ICGC Data PortalSTAC 
TCGA Data PortalSTAC 
Broad Tumor PortalSTAC
OASIS PortalSTAC [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSTAC  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSTAC
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch STAC
DgiDB (Drug Gene Interaction Database)STAC
DoCM (Curated mutations)STAC (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)STAC (select a term)
intoGenSTAC
Cancer3DSTAC(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602317   
Orphanet
MedgenSTAC
Genetic Testing Registry STAC
NextProtQ99469 [Medical]
TSGene6769
GENETestsSTAC
Target ValidationSTAC
Huge Navigator STAC [HugePedia]
snp3D : Map Gene to Disease6769
BioCentury BCIQSTAC
ClinGenSTAC
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6769
Chemical/Pharm GKB GenePA36175
Clinical trialSTAC
Miscellaneous
canSAR (ICR)STAC (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSTAC
EVEXSTAC
GoPubMedSTAC
iHOPSTAC
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:40:35 CEST 2017

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