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STAC2 (SH3 and cysteine rich domain 2)

Identity

Alias_symbol (synonym)24b2
Other alias24b2/STAC2
HGNC (Hugo) STAC2
LocusID (NCBI) 342667
Atlas_Id 54672
Location 17q12  [Link to chromosome band 17q12]
Location_base_pair Starts at 39210536 and ends at 39225787 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ACACA (17q12) / STAC2 (17q12)RARA (17q21.2) / STAC2 (17q12)RARA 17q21.2 / STAC2 17q12

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)STAC2   23990
Cards
Entrez_Gene (NCBI)STAC2  342667  SH3 and cysteine rich domain 2
Aliases24b2; 24b2/STAC2
GeneCards (Weizmann)STAC2
Ensembl hg19 (Hinxton)ENSG00000141750 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000141750 [Gene_View]  chr17:39210536-39225787 [Contig_View]  STAC2 [Vega]
ICGC DataPortalENSG00000141750
TCGA cBioPortalSTAC2
AceView (NCBI)STAC2
Genatlas (Paris)STAC2
WikiGenes342667
SOURCE (Princeton)STAC2
Genetics Home Reference (NIH)STAC2
Genomic and cartography
GoldenPath hg38 (UCSC)STAC2  -     chr17:39210536-39225787 -  17q12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)STAC2  -     17q12   [Description]    (hg19-Feb_2009)
EnsemblSTAC2 - 17q12 [CytoView hg19]  STAC2 - 17q12 [CytoView hg38]
Mapping of homologs : NCBISTAC2 [Mapview hg19]  STAC2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AJ608762 AK131500 AL049460 AM903073 BC109231
RefSeq transcript (Entrez)NM_198993
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)STAC2
Cluster EST : UnigeneHs.145068 [ NCBI ]
CGAP (NCI)Hs.145068
Alternative Splicing GalleryENSG00000141750
Gene ExpressionSTAC2 [ NCBI-GEO ]   STAC2 [ EBI - ARRAY_EXPRESS ]   STAC2 [ SEEK ]   STAC2 [ MEM ]
Gene Expression Viewer (FireBrowse)STAC2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)342667
GTEX Portal (Tissue expression)STAC2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZMT1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZMT1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZMT1
Splice isoforms : SwissVarQ6ZMT1
PhosPhoSitePlusQ6ZMT1
Domaine pattern : Prosite (Expaxy)SH3 (PS50002)    ZF_DAG_PE_1 (PS00479)    ZF_DAG_PE_2 (PS50081)   
Domains : Interpro (EBI)PE/DAG-bd    SH3_domain   
Domain families : Pfam (Sanger)C1_1 (PF00130)    SH3_9 (PF14604)   
Domain families : Pfam (NCBI)pfam00130    pfam14604   
Domain families : Smart (EMBL)C1 (SM00109)  SH3 (SM00326)  
Conserved Domain (NCBI)STAC2
DMDM Disease mutations342667
Blocks (Seattle)STAC2
SuperfamilyQ6ZMT1
Human Protein AtlasENSG00000141750
Peptide AtlasQ6ZMT1
HPRD18113
IPIIPI00395602   IPI00827786   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZMT1
IntAct (EBI)Q6ZMT1
FunCoupENSG00000141750
BioGRIDSTAC2
STRING (EMBL)STAC2
ZODIACSTAC2
Ontologies - Pathways
QuickGOQ6ZMT1
Ontology : AmiGOprotein binding  intracellular  intracellular signal transduction  metal ion binding  
Ontology : EGO-EBIprotein binding  intracellular  intracellular signal transduction  metal ion binding  
NDEx NetworkSTAC2
Atlas of Cancer Signalling NetworkSTAC2
Wikipedia pathwaysSTAC2
Orthology - Evolution
OrthoDB342667
GeneTree (enSembl)ENSG00000141750
Phylogenetic Trees/Animal Genes : TreeFamSTAC2
HOVERGENQ6ZMT1
HOGENOMQ6ZMT1
Homologs : HomoloGeneSTAC2
Homology/Alignments : Family Browser (UCSC)STAC2
Gene fusions - Rearrangements
Fusion : MitelmanRARA/STAC2 [17q21.2/17q12]  [t(17;17)(q12;q21)]  
Fusion: TCGARARA 17q21.2 STAC2 17q12 LUAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSTAC2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)STAC2
dbVarSTAC2
ClinVarSTAC2
1000_GenomesSTAC2 
Exome Variant ServerSTAC2
ExAC (Exome Aggregation Consortium)STAC2 (select the gene name)
Genetic variants : HAPMAP342667
Genomic Variants (DGV)STAC2 [DGVbeta]
DECIPHERSTAC2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSTAC2 
Mutations
ICGC Data PortalSTAC2 
TCGA Data PortalSTAC2 
Broad Tumor PortalSTAC2
OASIS PortalSTAC2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSTAC2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSTAC2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch STAC2
DgiDB (Drug Gene Interaction Database)STAC2
DoCM (Curated mutations)STAC2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)STAC2 (select a term)
intoGenSTAC2
Cancer3DSTAC2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSTAC2
Genetic Testing Registry STAC2
NextProtQ6ZMT1 [Medical]
TSGene342667
GENETestsSTAC2
Target ValidationSTAC2
Huge Navigator STAC2 [HugePedia]
snp3D : Map Gene to Disease342667
BioCentury BCIQSTAC2
ClinGenSTAC2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD342667
Chemical/Pharm GKB GenePA134939947
Clinical trialSTAC2
Miscellaneous
canSAR (ICR)STAC2 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSTAC2
EVEXSTAC2
GoPubMedSTAC2
iHOPSTAC2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:57:47 CEST 2017

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