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STAC3 (SH3 and cysteine rich domain 3)

Identity

Alias_symbol (synonym)MGC2793
Other aliasNAM
HGNC (Hugo) STAC3
LocusID (NCBI) 246329
Atlas_Id 74285
Location 12q13.3  [Link to chromosome band 12q13]
Location_base_pair Starts at 57243455 and ends at 57251193 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)STAC3   28423
Cards
Entrez_Gene (NCBI)STAC3  246329  SH3 and cysteine rich domain 3
AliasesNAM
GeneCards (Weizmann)STAC3
Ensembl hg19 (Hinxton)ENSG00000185482 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000185482 [Gene_View]  chr12:57243455-57251193 [Contig_View]  STAC3 [Vega]
ICGC DataPortalENSG00000185482
TCGA cBioPortalSTAC3
AceView (NCBI)STAC3
Genatlas (Paris)STAC3
WikiGenes246329
SOURCE (Princeton)STAC3
Genetics Home Reference (NIH)STAC3
Genomic and cartography
GoldenPath hg38 (UCSC)STAC3  -     chr12:57243455-57251193 -  12q13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)STAC3  -     12q13.3   [Description]    (hg19-Feb_2009)
EnsemblSTAC3 - 12q13.3 [CytoView hg19]  STAC3 - 12q13.3 [CytoView hg38]
Mapping of homologs : NCBISTAC3 [Mapview hg19]  STAC3 [Mapview hg38]
OMIM255995   615521   
Gene and transcription
Genbank (Entrez)AK057013 AK300688 AK311513 BC008069 BU738507
RefSeq transcript (Entrez)NM_001286256 NM_001286257 NM_145064
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)STAC3
Cluster EST : UnigeneHs.417595 [ NCBI ]
CGAP (NCI)Hs.417595
Alternative Splicing GalleryENSG00000185482
Gene ExpressionSTAC3 [ NCBI-GEO ]   STAC3 [ EBI - ARRAY_EXPRESS ]   STAC3 [ SEEK ]   STAC3 [ MEM ]
Gene Expression Viewer (FireBrowse)STAC3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)246329
GTEX Portal (Tissue expression)STAC3
Human Protein AtlasENSG00000185482-STAC3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96MF2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96MF2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96MF2
Splice isoforms : SwissVarQ96MF2
PhosPhoSitePlusQ96MF2
Domaine pattern : Prosite (Expaxy)SH3 (PS50002)    ZF_DAG_PE_1 (PS00479)    ZF_DAG_PE_2 (PS50081)   
Domains : Interpro (EBI)PE/DAG-bd    SH3_2    SH3_domain   
Domain families : Pfam (Sanger)C1_1 (PF00130)    SH3_1 (PF00018)    SH3_2 (PF07653)   
Domain families : Pfam (NCBI)pfam00130    pfam00018    pfam07653   
Domain families : Smart (EMBL)C1 (SM00109)  SH3 (SM00326)  
Conserved Domain (NCBI)STAC3
DMDM Disease mutations246329
Blocks (Seattle)STAC3
PDB (SRS)2DB6   
PDB (PDBSum)2DB6   
PDB (IMB)2DB6   
PDB (RSDB)2DB6   
Structural Biology KnowledgeBase2DB6   
SCOP (Structural Classification of Proteins)2DB6   
CATH (Classification of proteins structures)2DB6   
SuperfamilyQ96MF2
Human Protein Atlas [tissue]ENSG00000185482-STAC3 [tissue]
Peptide AtlasQ96MF2
HPRD11606
IPIIPI00065491   IPI00748058   IPI01011502   IPI01024733   IPI01025054   
Protein Interaction databases
DIP (DOE-UCLA)Q96MF2
IntAct (EBI)Q96MF2
FunCoupENSG00000185482
BioGRIDSTAC3
STRING (EMBL)STAC3
ZODIACSTAC3
Ontologies - Pathways
QuickGOQ96MF2
Ontology : AmiGOskeletal muscle contraction  protein binding  nucleoplasm  cytosol  neuromuscular synaptic transmission  intracellular signal transduction  identical protein binding  metal ion binding  skeletal muscle fiber development  
Ontology : EGO-EBIskeletal muscle contraction  protein binding  nucleoplasm  cytosol  neuromuscular synaptic transmission  intracellular signal transduction  identical protein binding  metal ion binding  skeletal muscle fiber development  
NDEx NetworkSTAC3
Atlas of Cancer Signalling NetworkSTAC3
Wikipedia pathwaysSTAC3
Orthology - Evolution
OrthoDB246329
GeneTree (enSembl)ENSG00000185482
Phylogenetic Trees/Animal Genes : TreeFamSTAC3
HOVERGENQ96MF2
HOGENOMQ96MF2
Homologs : HomoloGeneSTAC3
Homology/Alignments : Family Browser (UCSC)STAC3
Gene fusions - Rearrangements
Fusion: Tumor Portal STAC3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSTAC3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)STAC3
dbVarSTAC3
ClinVarSTAC3
1000_GenomesSTAC3 
Exome Variant ServerSTAC3
ExAC (Exome Aggregation Consortium)ENSG00000185482
GNOMAD BrowserENSG00000185482
Genetic variants : HAPMAP246329
Genomic Variants (DGV)STAC3 [DGVbeta]
DECIPHERSTAC3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSTAC3 
Mutations
ICGC Data PortalSTAC3 
TCGA Data PortalSTAC3 
Broad Tumor PortalSTAC3
OASIS PortalSTAC3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSTAC3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSTAC3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch STAC3
DgiDB (Drug Gene Interaction Database)STAC3
DoCM (Curated mutations)STAC3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)STAC3 (select a term)
intoGenSTAC3
Cancer3DSTAC3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM255995    615521   
Orphanet17775   
MedgenSTAC3
Genetic Testing Registry STAC3
NextProtQ96MF2 [Medical]
TSGene246329
GENETestsSTAC3
Target ValidationSTAC3
Huge Navigator STAC3 [HugePedia]
snp3D : Map Gene to Disease246329
BioCentury BCIQSTAC3
ClinGenSTAC3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD246329
Chemical/Pharm GKB GenePA134877600
Clinical trialSTAC3
Miscellaneous
canSAR (ICR)STAC3 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSTAC3
EVEXSTAC3
GoPubMedSTAC3
iHOPSTAC3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:31:09 CET 2017

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