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STAG3 (stromal antigen 3)

Identity

Other alias-
HGNC (Hugo) STAG3
LocusID (NCBI) 10734
Atlas_Id 46840
Location 7q22.1  [Link to chromosome band 7q22]
Location_base_pair Starts at 99775347 and ends at 99812010 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
PTPRK (6q22.33) / STAG3 (7q22.1)STAG3 (7q22.1) / HNF4G (8q21.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)STAG3   11356
Cards
Entrez_Gene (NCBI)STAG3  10734  stromal antigen 3
Aliases
GeneCards (Weizmann)STAG3
Ensembl hg19 (Hinxton)ENSG00000066923 [Gene_View]  chr7:99775347-99812010 [Contig_View]  STAG3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000066923 [Gene_View]  chr7:99775347-99812010 [Contig_View]  STAG3 [Vega]
ICGC DataPortalENSG00000066923
TCGA cBioPortalSTAG3
AceView (NCBI)STAG3
Genatlas (Paris)STAG3
WikiGenes10734
SOURCE (Princeton)STAG3
Genetics Home Reference (NIH)STAG3
Genomic and cartography
GoldenPath hg19 (UCSC)STAG3  -     chr7:99775347-99812010 +  7q22.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)STAG3  -     7q22.1   [Description]    (hg38-Dec_2013)
EnsemblSTAG3 - 7q22.1 [CytoView hg19]  STAG3 - 7q22.1 [CytoView hg38]
Mapping of homologs : NCBISTAG3 [Mapview hg19]  STAG3 [Mapview hg38]
OMIM608489   615723   
Gene and transcription
Genbank (Entrez)AA747738 AJ007798 AK292394 AK302587 AK302693
RefSeq transcript (Entrez)NM_001282716 NM_001282717 NM_001282718 NM_012447
RefSeq genomic (Entrez)NC_000007 NC_018918 NG_034114 NT_007933 NW_004929332
Consensus coding sequences : CCDS (NCBI)STAG3
Cluster EST : UnigeneHs.592283 [ NCBI ]
CGAP (NCI)Hs.592283
Alternative Splicing GalleryENSG00000066923
Gene ExpressionSTAG3 [ NCBI-GEO ]   STAG3 [ EBI - ARRAY_EXPRESS ]   STAG3 [ SEEK ]   STAG3 [ MEM ]
Gene Expression Viewer (FireBrowse)STAG3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10734
GTEX Portal (Tissue expression)STAG3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UJ98   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UJ98  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UJ98
Splice isoforms : SwissVarQ9UJ98
PhosPhoSitePlusQ9UJ98
Domaine pattern : Prosite (Expaxy)SCD (PS51425)   
Domains : Interpro (EBI)ARM-type_fold    SCD    STAG   
Domain families : Pfam (Sanger)STAG (PF08514)   
Domain families : Pfam (NCBI)pfam08514   
Conserved Domain (NCBI)STAG3
DMDM Disease mutations10734
Blocks (Seattle)STAG3
SuperfamilyQ9UJ98
Human Protein AtlasENSG00000066923
Peptide AtlasQ9UJ98
HPRD10253
IPIIPI00018353   IPI00216104   IPI00927514   IPI00386044   IPI00926523   IPI00926845   IPI00927052   
Protein Interaction databases
DIP (DOE-UCLA)Q9UJ98
IntAct (EBI)Q9UJ98
FunCoupENSG00000066923
BioGRIDSTAG3
STRING (EMBL)STAG3
ZODIACSTAG3
Ontologies - Pathways
QuickGOQ9UJ98
Ontology : AmiGOchromosome, centromeric region  synaptonemal complex  extracellular space  nucleus  synaptonemal complex assembly  meiotic cohesin complex  
Ontology : EGO-EBIchromosome, centromeric region  synaptonemal complex  extracellular space  nucleus  synaptonemal complex assembly  meiotic cohesin complex  
Pathways : KEGGOocyte meiosis   
NDEx NetworkSTAG3
Atlas of Cancer Signalling NetworkSTAG3
Wikipedia pathwaysSTAG3
Orthology - Evolution
OrthoDB10734
GeneTree (enSembl)ENSG00000066923
Phylogenetic Trees/Animal Genes : TreeFamSTAG3
HOVERGENQ9UJ98
HOGENOMQ9UJ98
Homologs : HomoloGeneSTAG3
Homology/Alignments : Family Browser (UCSC)STAG3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSTAG3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)STAG3
dbVarSTAG3
ClinVarSTAG3
1000_GenomesSTAG3 
Exome Variant ServerSTAG3
ExAC (Exome Aggregation Consortium)STAG3 (select the gene name)
Genetic variants : HAPMAP10734
Genomic Variants (DGV)STAG3 [DGVbeta]
DECIPHER (Syndromes)7:99775347-99812010  ENSG00000066923
CONAN: Copy Number AnalysisSTAG3 
Mutations
ICGC Data PortalSTAG3 
TCGA Data PortalSTAG3 
Broad Tumor PortalSTAG3
OASIS PortalSTAG3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSTAG3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSTAG3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch STAG3
DgiDB (Drug Gene Interaction Database)STAG3
DoCM (Curated mutations)STAG3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)STAG3 (select a term)
intoGenSTAG3
Cancer3DSTAG3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608489    615723   
Orphanet
MedgenSTAG3
Genetic Testing Registry STAG3
NextProtQ9UJ98 [Medical]
TSGene10734
GENETestsSTAG3
Huge Navigator STAG3 [HugePedia]
snp3D : Map Gene to Disease10734
BioCentury BCIQSTAG3
ClinGenSTAG3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10734
Chemical/Pharm GKB GenePA36178
Clinical trialSTAG3
Miscellaneous
canSAR (ICR)STAG3 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSTAG3
EVEXSTAG3
GoPubMedSTAG3
iHOPSTAG3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:21:10 CEST 2017

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