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STAG3 (stromal antigen 3)

Identity

Alias (NCBI)SPGF61
HGNC (Hugo) STAG3
LocusID (NCBI) 10734
Atlas_Id 46840
Location 7q22.1  [Link to chromosome band 7q22]
Location_base_pair Starts at 100177918 and ends at 100214381 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
PTPRK (6q22.33)::STAG3 (7q22.1)STAG3 (7q22.1)::HNF4G (8q21.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)STAG3   11356
Cards
Entrez_Gene (NCBI)STAG3    stromal antigen 3
AliasesSPGF61
GeneCards (Weizmann)STAG3
Ensembl hg19 (Hinxton)ENSG00000066923 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000066923 [Gene_View]  ENSG00000066923 [Sequence]  chr7:100177918-100214381 [Contig_View]  STAG3 [Vega]
ICGC DataPortalENSG00000066923
TCGA cBioPortalSTAG3
AceView (NCBI)STAG3
Genatlas (Paris)STAG3
SOURCE (Princeton)STAG3
Genetics Home Reference (NIH)STAG3
Genomic and cartography
GoldenPath hg38 (UCSC)STAG3  -     chr7:100177918-100214381 +  7q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)STAG3  -     7q22.1   [Description]    (hg19-Feb_2009)
GoldenPathSTAG3 - 7q22.1 [CytoView hg19]  STAG3 - 7q22.1 [CytoView hg38]
ImmunoBaseENSG00000066923
Genome Data Viewer NCBISTAG3 [Mapview hg19]  
OMIM608489   615723   619672   
Gene and transcription
Genbank (Entrez)AA747738 AJ007798 AK292394 AK302587 AK302693
RefSeq transcript (Entrez)NM_001282716 NM_001282717 NM_001282718 NM_001375438 NM_012447
Consensus coding sequences : CCDS (NCBI)STAG3
Gene ExpressionSTAG3 [ NCBI-GEO ]   STAG3 [ EBI - ARRAY_EXPRESS ]   STAG3 [ SEEK ]   STAG3 [ MEM ]
Gene Expression Viewer (FireBrowse)STAG3 [ Firebrowse - Broad ]
GenevisibleExpression of STAG3 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10734
GTEX Portal (Tissue expression)STAG3
Human Protein AtlasENSG00000066923-STAG3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UJ98   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UJ98  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UJ98
PhosPhoSitePlusQ9UJ98
Domaine pattern : Prosite (Expaxy)SCD (PS51425)   
Domains : Interpro (EBI)ARM-type_fold    Cohesin_Scc3/SA    SCD    STAG   
Domain families : Pfam (Sanger)STAG (PF08514)   
Domain families : Pfam (NCBI)pfam08514   
Conserved Domain (NCBI)STAG3
SuperfamilyQ9UJ98
AlphaFold pdb e-kbQ9UJ98   
Human Protein Atlas [tissue]ENSG00000066923-STAG3 [tissue]
HPRD10253
Protein Interaction databases
DIP (DOE-UCLA)Q9UJ98
IntAct (EBI)Q9UJ98
BioGRIDSTAG3
STRING (EMBL)STAG3
ZODIACSTAG3
Ontologies - Pathways
QuickGOQ9UJ98
Ontology : AmiGOchromosome, centromeric region  chromatin  synaptonemal complex  chromatin binding  extracellular space  nucleus  nucleoplasm  nucleolus  sister chromatid cohesion  synaptonemal complex assembly  cohesin complex  meiotic cohesin complex  
Ontology : EGO-EBIchromosome, centromeric region  chromatin  synaptonemal complex  chromatin binding  extracellular space  nucleus  nucleoplasm  nucleolus  sister chromatid cohesion  synaptonemal complex assembly  cohesin complex  meiotic cohesin complex  
Pathways : KEGGKEGG_OOCYTE_MEIOSIS   
NDEx NetworkSTAG3
Atlas of Cancer Signalling NetworkSTAG3
Wikipedia pathwaysSTAG3
Orthology - Evolution
OrthoDB10734
GeneTree (enSembl)ENSG00000066923
Phylogenetic Trees/Animal Genes : TreeFamSTAG3
Homologs : HomoloGeneSTAG3
Homology/Alignments : Family Browser (UCSC)STAG3
Gene fusions - Rearrangements
Fusion : QuiverSTAG3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSTAG3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)STAG3
dbVarSTAG3
ClinVarSTAG3
MonarchSTAG3
1000_GenomesSTAG3 
Exome Variant ServerSTAG3
GNOMAD BrowserENSG00000066923
Varsome BrowserSTAG3
ACMGSTAG3 variants
VarityQ9UJ98
Genomic Variants (DGV)STAG3 [DGVbeta]
DECIPHERSTAG3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSTAG3 
Mutations
ICGC Data PortalSTAG3 
TCGA Data PortalSTAG3 
Broad Tumor PortalSTAG3
OASIS PortalSTAG3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSTAG3  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSTAG3
Mutations and Diseases : HGMDSTAG3
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaSTAG3
DgiDB (Drug Gene Interaction Database)STAG3
DoCM (Curated mutations)STAG3
CIViC (Clinical Interpretations of Variants in Cancer)STAG3
Cancer3DSTAG3
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608489    615723    619672   
Orphanet2307   
DisGeNETSTAG3
MedgenSTAG3
Genetic Testing Registry STAG3
NextProtQ9UJ98 [Medical]
GENETestsSTAG3
Target ValidationSTAG3
Huge Navigator STAG3 [HugePedia]
ClinGenSTAG3
Clinical trials, drugs, therapy
MyCancerGenomeSTAG3
Protein Interactions : CTDSTAG3
Pharm GKB GenePA36178
PharosQ9UJ98
Clinical trialSTAG3
Miscellaneous
canSAR (ICR)STAG3
HarmonizomeSTAG3
ARCHS4STAG3
DataMed IndexSTAG3
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSTAG3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Thu Jan 20 13:01:10 CET 2022

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