Atlas of Genetics and Cytogenetics in Oncology and Haematology


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STAG3L1 (stromal antigen 3-like 1 (pseudogene))

Identity

Alias_namesstromal antigen 3-like 1
Alias_symbol (synonym)DKFZP434A0131
STAG3L1P
Other aliasSTAG3L2
STAG3L3
HGNC (Hugo) STAG3L1
LocusID (NCBI) 54441
Atlas_Id 78086
Location 7q11.23  [Link to chromosome band 7q11]
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)STAG3L1   33852
Cards
Entrez_Gene (NCBI)STAG3L1  54441  stromal antigen 3-like 1 (pseudogene)
AliasesSTAG3L1P; STAG3L2; STAG3L3
GeneCards (Weizmann)STAG3L1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  - [Contig_View]  STAG3L1 [Vega]
TCGA cBioPortalSTAG3L1
AceView (NCBI)STAG3L1
Genatlas (Paris)STAG3L1
WikiGenes54441
SOURCE (Princeton)STAG3L1
Genetics Home Reference (NIH)STAG3L1
Genomic and cartography
GoldenPath hg38 (UCSC)STAG3L1  -  
GoldenPath hg19 (UCSC)STAG3L1  -  
EnsemblSTAG3L1 - [CytoView hg19]  STAG3L1 - [CytoView hg38]
Mapping of homologs : NCBISTAG3L1 [Mapview hg19]  STAG3L1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA724158 AK289466 AK291820 BC119762 BC146456
RefSeq transcript (Entrez)NM_001002840 NM_018991
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)STAG3L1
Cluster EST : UnigeneHs.694664 [ NCBI ]
CGAP (NCI)Hs.694664
Gene ExpressionSTAG3L1 [ NCBI-GEO ]   STAG3L1 [ EBI - ARRAY_EXPRESS ]   STAG3L1 [ SEEK ]   STAG3L1 [ MEM ]
Gene Expression Viewer (FireBrowse)STAG3L1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54441
GTEX Portal (Tissue expression)STAG3L1
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0CL83   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0CL83  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0CL83
Splice isoforms : SwissVarP0CL83
PhosPhoSitePlusP0CL83
Domaine pattern : Prosite (Expaxy)SCD (PS51425)   
Domains : Interpro (EBI)ARM-type_fold    SCD   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)STAG3L1
DMDM Disease mutations54441
Blocks (Seattle)STAG3L1
SuperfamilyP0CL83
Peptide AtlasP0CL83
HPRD13150
IPIIPI00413244   IPI00924853   IPI00927896   IPI00177925   IPI00925673   
Protein Interaction databases
DIP (DOE-UCLA)P0CL83
IntAct (EBI)P0CL83
BioGRIDSTAG3L1
STRING (EMBL)STAG3L1
ZODIACSTAG3L1
Ontologies - Pathways
QuickGOP0CL83
Ontology : AmiGOnucleus  
Ontology : EGO-EBInucleus  
NDEx NetworkSTAG3L1
Atlas of Cancer Signalling NetworkSTAG3L1
Wikipedia pathwaysSTAG3L1
Orthology - Evolution
OrthoDB54441
Phylogenetic Trees/Animal Genes : TreeFamSTAG3L1
HOVERGENP0CL83
HOGENOMP0CL83
Homologs : HomoloGeneSTAG3L1
Homology/Alignments : Family Browser (UCSC)STAG3L1
Gene fusions - Rearrangements
Tumor Fusion PortalSTAG3L1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSTAG3L1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)STAG3L1
dbVarSTAG3L1
ClinVarSTAG3L1
1000_GenomesSTAG3L1 
Exome Variant ServerSTAG3L1
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP54441
Genomic Variants (DGV)STAG3L1 [DGVbeta]
DECIPHERSTAG3L1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSTAG3L1 
Mutations
ICGC Data PortalSTAG3L1 
TCGA Data PortalSTAG3L1 
Broad Tumor PortalSTAG3L1
OASIS PortalSTAG3L1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSTAG3L1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSTAG3L1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch STAG3L1
DgiDB (Drug Gene Interaction Database)STAG3L1
DoCM (Curated mutations)STAG3L1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)STAG3L1 (select a term)
intoGenSTAG3L1
Cancer3DSTAG3L1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETSTAG3L1
MedgenSTAG3L1
Genetic Testing Registry STAG3L1
NextProtP0CL83 [Medical]
TSGene54441
GENETestsSTAG3L1
Target ValidationSTAG3L1
Huge Navigator STAG3L1 [HugePedia]
snp3D : Map Gene to Disease54441
BioCentury BCIQSTAG3L1
ClinGenSTAG3L1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54441
Chemical/Pharm GKB GenePA162404870
Clinical trialSTAG3L1
Miscellaneous
canSAR (ICR)STAG3L1 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSTAG3L1
EVEXSTAG3L1
GoPubMedSTAG3L1
iHOPSTAG3L1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:17:21 CET 2017

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