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STAG3L2 (stromal antigen 3-like 2 (pseudogene))

Identity

Alias_namesstromal antigen 3-like 2
Alias_symbol (synonym)MGC131759
STAG3L2P
Other aliasSTAG3L1
STAG3L3
HGNC (Hugo) STAG3L2
LocusID (NCBI) 442582
Atlas_Id 74286
Location 7q11.23  [Link to chromosome band 7q11]
Location_base_pair Starts at 74299100 and ends at 74306687 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)STAG3L2   33886
Cards
Entrez_Gene (NCBI)STAG3L2  442582  stromal antigen 3-like 2 (pseudogene)
AliasesSTAG3L1; STAG3L2P; STAG3L3
GeneCards (Weizmann)STAG3L2
Ensembl hg19 (Hinxton) [Gene_View]  chr7:74299100-74306687 [Contig_View]  STAG3L2 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr7:74299100-74306687 [Contig_View]  STAG3L2 [Vega]
TCGA cBioPortalSTAG3L2
AceView (NCBI)STAG3L2
Genatlas (Paris)STAG3L2
WikiGenes442582
SOURCE (Princeton)STAG3L2
Genetics Home Reference (NIH)STAG3L2
Genomic and cartography
GoldenPath hg19 (UCSC)STAG3L2  -     chr7:74299100-74306687 -  7q11.23   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)STAG3L2  -     7q11.23   [Description]    (hg38-Dec_2013)
EnsemblSTAG3L2 - 7q11.23 [CytoView hg19]  STAG3L2 - 7q11.23 [CytoView hg38]
Mapping of homologs : NCBISTAG3L2 [Mapview hg19]  STAG3L2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK303473 AK307228 AK309007 BC002581 BC095487
RefSeq transcript (Entrez)NM_001025202
RefSeq genomic (Entrez)NC_000007 NC_018918 NT_007933 NW_004929332
Consensus coding sequences : CCDS (NCBI)STAG3L2
Cluster EST : UnigeneHs.666638 [ NCBI ]
CGAP (NCI)Hs.666638
Gene ExpressionSTAG3L2 [ NCBI-GEO ]   STAG3L2 [ EBI - ARRAY_EXPRESS ]   STAG3L2 [ SEEK ]   STAG3L2 [ MEM ]
Gene Expression Viewer (FireBrowse)STAG3L2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)442582
GTEX Portal (Tissue expression)STAG3L2
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0CL84   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0CL84  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0CL84
Splice isoforms : SwissVarP0CL84
PhosPhoSitePlusP0CL84
Domaine pattern : Prosite (Expaxy)SCD (PS51425)   
Domains : Interpro (EBI)ARM-type_fold    SCD   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)STAG3L2
DMDM Disease mutations442582
Blocks (Seattle)STAG3L2
SuperfamilyP0CL84
Peptide AtlasP0CL84
IPIIPI00556151   IPI00878533   IPI00872336   
Protein Interaction databases
DIP (DOE-UCLA)P0CL84
IntAct (EBI)P0CL84
BioGRIDSTAG3L2
STRING (EMBL)STAG3L2
ZODIACSTAG3L2
Ontologies - Pathways
QuickGOP0CL84
Ontology : AmiGOnucleus  
Ontology : EGO-EBInucleus  
NDEx NetworkSTAG3L2
Atlas of Cancer Signalling NetworkSTAG3L2
Wikipedia pathwaysSTAG3L2
Orthology - Evolution
OrthoDB442582
Phylogenetic Trees/Animal Genes : TreeFamSTAG3L2
HOVERGENP0CL84
HOGENOMP0CL84
Homologs : HomoloGeneSTAG3L2
Homology/Alignments : Family Browser (UCSC)STAG3L2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSTAG3L2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)STAG3L2
dbVarSTAG3L2
ClinVarSTAG3L2
1000_GenomesSTAG3L2 
Exome Variant ServerSTAG3L2
ExAC (Exome Aggregation Consortium)STAG3L2 (select the gene name)
Genetic variants : HAPMAP442582
Genomic Variants (DGV)STAG3L2 [DGVbeta]
DECIPHER (Syndromes)7:74299100-74306687  
CONAN: Copy Number AnalysisSTAG3L2 
Mutations
ICGC Data PortalSTAG3L2 
TCGA Data PortalSTAG3L2 
Broad Tumor PortalSTAG3L2
OASIS PortalSTAG3L2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSTAG3L2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSTAG3L2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch STAG3L2
DgiDB (Drug Gene Interaction Database)STAG3L2
DoCM (Curated mutations)STAG3L2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)STAG3L2 (select a term)
intoGenSTAG3L2
Cancer3DSTAG3L2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSTAG3L2
Genetic Testing Registry STAG3L2
NextProtP0CL84 [Medical]
TSGene442582
GENETestsSTAG3L2
Huge Navigator STAG3L2 [HugePedia]
snp3D : Map Gene to Disease442582
BioCentury BCIQSTAG3L2
ClinGenSTAG3L2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD442582
Chemical/Pharm GKB GenePA162404891
Clinical trialSTAG3L2
Miscellaneous
canSAR (ICR)STAG3L2 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSTAG3L2
EVEXSTAG3L2
GoPubMedSTAG3L2
iHOPSTAG3L2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:46:51 CET 2017

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