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STAG3L3 (stromal antigen 3-like 3 (pseudogene))

Identity

Alias_namesstromal antigen 3-like 3
Alias_symbol (synonym)STAG3L3P
Other aliasSTAG3L1
STAG3L2
HGNC (Hugo) STAG3L3
LocusID (NCBI) 442578
Atlas_Id 74287
Location 7q11.23  [Link to chromosome band 7q11]
Location_base_pair Starts at 75359381 and ends at 75395399 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
PCGF3 (4p16.3) / STAG3L3 (7q11.23)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)STAG3L3   33845
Cards
Entrez_Gene (NCBI)STAG3L3  442578  stromal antigen 3-like 3 (pseudogene)
AliasesSTAG3L1; STAG3L2; STAG3L3P
GeneCards (Weizmann)STAG3L3
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr7:75359381-75395399 [Contig_View]  STAG3L3 [Vega]
TCGA cBioPortalSTAG3L3
AceView (NCBI)STAG3L3
Genatlas (Paris)STAG3L3
WikiGenes442578
SOURCE (Princeton)STAG3L3
Genetics Home Reference (NIH)STAG3L3
Genomic and cartography
GoldenPath hg38 (UCSC)STAG3L3  -     chr7:75359381-75395399 +  7q11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)STAG3L3  -     7q11.23   [Description]    (hg19-Feb_2009)
EnsemblSTAG3L3 - 7q11.23 [CytoView hg19]  STAG3L3 - 7q11.23 [CytoView hg38]
Mapping of homologs : NCBISTAG3L3 [Mapview hg19]  STAG3L3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK303592 AK316130 AL137492 AY313779 BC010433
RefSeq transcript (Entrez)NM_001013739
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)STAG3L3
Cluster EST : UnigeneHs.661254 [ NCBI ]
CGAP (NCI)Hs.661254
Gene ExpressionSTAG3L3 [ NCBI-GEO ]   STAG3L3 [ EBI - ARRAY_EXPRESS ]   STAG3L3 [ SEEK ]   STAG3L3 [ MEM ]
Gene Expression Viewer (FireBrowse)STAG3L3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)442578
GTEX Portal (Tissue expression)STAG3L3
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0CL85   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0CL85  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0CL85
Splice isoforms : SwissVarP0CL85
PhosPhoSitePlusP0CL85
Domaine pattern : Prosite (Expaxy)SCD (PS51425)   
Domains : Interpro (EBI)ARM-type_fold    SCD   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)STAG3L3
DMDM Disease mutations442578
Blocks (Seattle)STAG3L3
SuperfamilyP0CL85
Peptide AtlasP0CL85
HPRD18656
IPIIPI00456705   IPI00925163   IPI00941121   IPI00940372   IPI00924903   IPI00924767   
Protein Interaction databases
DIP (DOE-UCLA)P0CL85
IntAct (EBI)P0CL85
BioGRIDSTAG3L3
STRING (EMBL)STAG3L3
ZODIACSTAG3L3
Ontologies - Pathways
QuickGOP0CL85
Ontology : AmiGOnucleus  
Ontology : EGO-EBInucleus  
NDEx NetworkSTAG3L3
Atlas of Cancer Signalling NetworkSTAG3L3
Wikipedia pathwaysSTAG3L3
Orthology - Evolution
OrthoDB442578
Phylogenetic Trees/Animal Genes : TreeFamSTAG3L3
HOVERGENP0CL85
HOGENOMP0CL85
Homologs : HomoloGeneSTAG3L3
Homology/Alignments : Family Browser (UCSC)STAG3L3
Gene fusions - Rearrangements
Tumor Fusion PortalSTAG3L3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSTAG3L3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)STAG3L3
dbVarSTAG3L3
ClinVarSTAG3L3
1000_GenomesSTAG3L3 
Exome Variant ServerSTAG3L3
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP442578
Genomic Variants (DGV)STAG3L3 [DGVbeta]
DECIPHERSTAG3L3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSTAG3L3 
Mutations
ICGC Data PortalSTAG3L3 
TCGA Data PortalSTAG3L3 
Broad Tumor PortalSTAG3L3
OASIS PortalSTAG3L3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSTAG3L3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSTAG3L3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch STAG3L3
DgiDB (Drug Gene Interaction Database)STAG3L3
DoCM (Curated mutations)STAG3L3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)STAG3L3 (select a term)
intoGenSTAG3L3
Cancer3DSTAG3L3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETSTAG3L3
MedgenSTAG3L3
Genetic Testing Registry STAG3L3
NextProtP0CL85 [Medical]
TSGene442578
GENETestsSTAG3L3
Target ValidationSTAG3L3
Huge Navigator STAG3L3 [HugePedia]
snp3D : Map Gene to Disease442578
BioCentury BCIQSTAG3L3
ClinGenSTAG3L3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD442578
Chemical/Pharm GKB GenePA162404912
Clinical trialSTAG3L3
Miscellaneous
canSAR (ICR)STAG3L3 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSTAG3L3
EVEXSTAG3L3
GoPubMedSTAG3L3
iHOPSTAG3L3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:17:21 CET 2017

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