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STAG3L4 (stromal antigen 3-like 4 (pseudogene))

Identity

Alias_namesstromal antigen 3-like 4
Alias_symbol (synonym)FLJ13195
STAG3L4P
Other alias
HGNC (Hugo) STAG3L4
LocusID (NCBI) 64940
Atlas_Id 78065
Location 7q11.21  [Link to chromosome band 7q11]

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)STAG3L4   33887
Cards
Entrez_Gene (NCBI)STAG3L4  64940  stromal antigen 3-like 4 (pseudogene)
AliasesSTAG3L4P
GeneCards (Weizmann)STAG3L4
Ensembl hg19 (Hinxton)ENSG00000106610 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000106610 [Gene_View]  - [Contig_View]  STAG3L4 [Vega]
ICGC DataPortalENSG00000106610
TCGA cBioPortalSTAG3L4
AceView (NCBI)STAG3L4
Genatlas (Paris)STAG3L4
WikiGenes64940
SOURCE (Princeton)STAG3L4
Genetics Home Reference (NIH)STAG3L4
Genomic and cartography
GoldenPath hg38 (UCSC)STAG3L4  -  
GoldenPath hg19 (UCSC)STAG3L4  -  
EnsemblSTAG3L4 - [CytoView hg19]  STAG3L4 - [CytoView hg38]
Mapping of homologs : NCBISTAG3L4 [Mapview hg19]  STAG3L4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA012895 AK023257 AK307290 AK308931 BC026058
RefSeq transcript (Entrez)NM_022906
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)STAG3L4
Cluster EST : UnigeneHs.632013 [ NCBI ]
CGAP (NCI)Hs.632013
Alternative Splicing GalleryENSG00000106610
Gene ExpressionSTAG3L4 [ NCBI-GEO ]   STAG3L4 [ EBI - ARRAY_EXPRESS ]   STAG3L4 [ SEEK ]   STAG3L4 [ MEM ]
Gene Expression Viewer (FireBrowse)STAG3L4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64940
GTEX Portal (Tissue expression)STAG3L4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TBR4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TBR4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TBR4
Splice isoforms : SwissVarQ8TBR4
PhosPhoSitePlusQ8TBR4
Domains : Interpro (EBI)STAG   
Domain families : Pfam (Sanger)STAG (PF08514)   
Domain families : Pfam (NCBI)pfam08514   
Conserved Domain (NCBI)STAG3L4
DMDM Disease mutations64940
Blocks (Seattle)STAG3L4
SuperfamilyQ8TBR4
Human Protein AtlasENSG00000106610
Peptide AtlasQ8TBR4
HPRD07817
IPIIPI00290851   IPI00925738   IPI00925088   
Protein Interaction databases
DIP (DOE-UCLA)Q8TBR4
IntAct (EBI)Q8TBR4
FunCoupENSG00000106610
BioGRIDSTAG3L4
STRING (EMBL)STAG3L4
ZODIACSTAG3L4
Ontologies - Pathways
QuickGOQ8TBR4
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkSTAG3L4
Atlas of Cancer Signalling NetworkSTAG3L4
Wikipedia pathwaysSTAG3L4
Orthology - Evolution
OrthoDB64940
GeneTree (enSembl)ENSG00000106610
Phylogenetic Trees/Animal Genes : TreeFamSTAG3L4
HOVERGENQ8TBR4
HOGENOMQ8TBR4
Homologs : HomoloGeneSTAG3L4
Homology/Alignments : Family Browser (UCSC)STAG3L4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSTAG3L4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)STAG3L4
dbVarSTAG3L4
ClinVarSTAG3L4
1000_GenomesSTAG3L4 
Exome Variant ServerSTAG3L4
ExAC (Exome Aggregation Consortium)STAG3L4 (select the gene name)
Genetic variants : HAPMAP64940
Genomic Variants (DGV)STAG3L4 [DGVbeta]
DECIPHERSTAG3L4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSTAG3L4 
Mutations
ICGC Data PortalSTAG3L4 
TCGA Data PortalSTAG3L4 
Broad Tumor PortalSTAG3L4
OASIS PortalSTAG3L4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSTAG3L4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSTAG3L4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch STAG3L4
DgiDB (Drug Gene Interaction Database)STAG3L4
DoCM (Curated mutations)STAG3L4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)STAG3L4 (select a term)
intoGenSTAG3L4
Cancer3DSTAG3L4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSTAG3L4
Genetic Testing Registry STAG3L4
NextProtQ8TBR4 [Medical]
TSGene64940
GENETestsSTAG3L4
Target ValidationSTAG3L4
Huge Navigator STAG3L4 [HugePedia]
snp3D : Map Gene to Disease64940
BioCentury BCIQSTAG3L4
ClinGenSTAG3L4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64940
Chemical/Pharm GKB GenePA162404933
Clinical trialSTAG3L4
Miscellaneous
canSAR (ICR)STAG3L4 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSTAG3L4
EVEXSTAG3L4
GoPubMedSTAG3L4
iHOPSTAG3L4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:40:36 CEST 2017

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