Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

STAG3L5P (stromal antigen 3-like 5 pseudogene)

Identity

Other alias-
HGNC (Hugo) STAG3L5P
LocusID (NCBI) 101735302
Atlas_Id 74288
Location 7q22.1  [Link to chromosome band 7q22]
Location_base_pair Starts at 100336079 and ends at 100341328 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)STAG3L5P   48896
Cards
Entrez_Gene (NCBI)STAG3L5P  101735302  stromal antigen 3-like 5 pseudogene
Aliases
GeneCards (Weizmann)STAG3L5P
Ensembl hg19 (Hinxton)ENSG00000242294 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000242294 [Gene_View]  chr7:100336079-100341328 [Contig_View]  STAG3L5P [Vega]
ICGC DataPortalENSG00000242294
TCGA cBioPortalSTAG3L5P
AceView (NCBI)STAG3L5P
Genatlas (Paris)STAG3L5P
WikiGenes101735302
SOURCE (Princeton)STAG3L5P
Genetics Home Reference (NIH)STAG3L5P
Genomic and cartography
GoldenPath hg38 (UCSC)STAG3L5P  -     chr7:100336079-100341328 +  7q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)STAG3L5P  -     7q22.1   [Description]    (hg19-Feb_2009)
EnsemblSTAG3L5P - 7q22.1 [CytoView hg19]  STAG3L5P - 7q22.1 [CytoView hg38]
Mapping of homologs : NCBISTAG3L5P [Mapview hg19]  STAG3L5P [Mapview hg38]
Gene and transcription
Genbank (Entrez)BM826568 DA306290
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)STAG3L5P
Cluster EST : UnigeneHs.521075 [ NCBI ]
CGAP (NCI)Hs.521075
Alternative Splicing GalleryENSG00000242294
Gene ExpressionSTAG3L5P [ NCBI-GEO ]   STAG3L5P [ EBI - ARRAY_EXPRESS ]   STAG3L5P [ SEEK ]   STAG3L5P [ MEM ]
Gene Expression Viewer (FireBrowse)STAG3L5P [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)101735302
GTEX Portal (Tissue expression)STAG3L5P
Human Protein AtlasENSG00000242294-STAG3L5P [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)STAG3L5P
DMDM Disease mutations101735302
Blocks (Seattle)STAG3L5P
Human Protein Atlas [tissue]ENSG00000242294-STAG3L5P [tissue]
Protein Interaction databases
FunCoupENSG00000242294
BioGRIDSTAG3L5P
STRING (EMBL)STAG3L5P
ZODIACSTAG3L5P
Ontologies - Pathways
Huge Navigator STAG3L5P [HugePedia]
snp3D : Map Gene to Disease101735302
BioCentury BCIQSTAG3L5P
ClinGenSTAG3L5P
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101735302
Clinical trialSTAG3L5P
Miscellaneous
canSAR (ICR)STAG3L5P (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSTAG3L5P
EVEXSTAG3L5P
GoPubMedSTAG3L5P
iHOPSTAG3L5P
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:17:21 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.