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STAMBP (STAM binding protein)

Identity

Alias_symbol (synonym)AMSH
Other aliasMICCAP
HGNC (Hugo) STAMBP
LocusID (NCBI) 10617
Atlas_Id 56018
Location 2p13.1  [Link to chromosome band 2p13]
Location_base_pair Starts at 74056114 and ends at 74094295 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
DGUOK (2p13.1) / STAMBP (2p13.1)STAMBP (2p13.1) / STAMBP (2p13.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)STAMBP   16950
Cards
Entrez_Gene (NCBI)STAMBP  10617  STAM binding protein
AliasesAMSH; MICCAP
GeneCards (Weizmann)STAMBP
Ensembl hg19 (Hinxton)ENSG00000124356 [Gene_View]  chr2:74056114-74094295 [Contig_View]  STAMBP [Vega]
Ensembl hg38 (Hinxton)ENSG00000124356 [Gene_View]  chr2:74056114-74094295 [Contig_View]  STAMBP [Vega]
ICGC DataPortalENSG00000124356
TCGA cBioPortalSTAMBP
AceView (NCBI)STAMBP
Genatlas (Paris)STAMBP
WikiGenes10617
SOURCE (Princeton)STAMBP
Genetics Home Reference (NIH)STAMBP
Genomic and cartography
GoldenPath hg19 (UCSC)STAMBP  -     chr2:74056114-74094295 +  2p13.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)STAMBP  -     2p13.1   [Description]    (hg38-Dec_2013)
EnsemblSTAMBP - 2p13.1 [CytoView hg19]  STAMBP - 2p13.1 [CytoView hg38]
Mapping of homologs : NCBISTAMBP [Mapview hg19]  STAMBP [Mapview hg38]
OMIM606247   614261   
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_006463 NM_201647 NM_213622
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)STAMBP
Cluster EST : UnigeneHs.469018 [ NCBI ]
CGAP (NCI)Hs.469018
Alternative Splicing GalleryENSG00000124356
Gene ExpressionSTAMBP [ NCBI-GEO ]   STAMBP [ EBI - ARRAY_EXPRESS ]   STAMBP [ SEEK ]   STAMBP [ MEM ]
Gene Expression Viewer (FireBrowse)STAMBP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10617
GTEX Portal (Tissue expression)STAMBP
Protein : pattern, domain, 3D structure
UniProt/SwissProtO95630   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO95630  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO95630
Splice isoforms : SwissVarO95630
Catalytic activity : Enzyme3.4.19.- [ Enzyme-Expasy ]   3.4.19.-3.4.19.- [ IntEnz-EBI ]   3.4.19.- [ BRENDA ]   3.4.19.- [ KEGG ]   
PhosPhoSitePlusO95630
Domains : Interpro (EBI)JAMM/MPN+_dom    USP8_dimer   
Domain families : Pfam (Sanger)JAB (PF01398)    USP8_dimer (PF08969)   
Domain families : Pfam (NCBI)pfam01398    pfam08969   
Domain families : Smart (EMBL)JAB_MPN (SM00232)  
Conserved Domain (NCBI)STAMBP
DMDM Disease mutations10617
Blocks (Seattle)STAMBP
PDB (SRS)2XZE    3RZU    3RZV   
PDB (PDBSum)2XZE    3RZU    3RZV   
PDB (IMB)2XZE    3RZU    3RZV   
PDB (RSDB)2XZE    3RZU    3RZV   
Structural Biology KnowledgeBase2XZE    3RZU    3RZV   
SCOP (Structural Classification of Proteins)2XZE    3RZU    3RZV   
CATH (Classification of proteins structures)2XZE    3RZU    3RZV   
SuperfamilyO95630
Human Protein AtlasENSG00000124356
Peptide AtlasO95630
HPRD05877
IPIIPI00007943   IPI00917973   IPI00916971   IPI00917136   IPI01015782   
Protein Interaction databases
DIP (DOE-UCLA)O95630
IntAct (EBI)O95630
FunCoupENSG00000124356
BioGRIDSTAMBP
STRING (EMBL)STAMBP
ZODIACSTAMBP
Ontologies - Pathways
QuickGOO95630
Ontology : AmiGOmitotic cytokinesis  thiol-dependent ubiquitin-specific protease activity  protein binding  nucleus  nucleoplasm  cytoplasm  early endosome  plasma membrane  JAK-STAT cascade  metallopeptidase activity  positive regulation of cell proliferation  negative regulation of phosphatidylinositol 3-kinase signaling  protein deubiquitination  protein domain specific binding  cleavage furrow  negative regulation of neuron apoptotic process  negative regulation of Ras protein signal transduction  metal ion binding  extracellular exosome  
Ontology : EGO-EBImitotic cytokinesis  thiol-dependent ubiquitin-specific protease activity  protein binding  nucleus  nucleoplasm  cytoplasm  early endosome  plasma membrane  JAK-STAT cascade  metallopeptidase activity  positive regulation of cell proliferation  negative regulation of phosphatidylinositol 3-kinase signaling  protein deubiquitination  protein domain specific binding  cleavage furrow  negative regulation of neuron apoptotic process  negative regulation of Ras protein signal transduction  metal ion binding  extracellular exosome  
Pathways : KEGGEndocytosis   
NDEx NetworkSTAMBP
Atlas of Cancer Signalling NetworkSTAMBP
Wikipedia pathwaysSTAMBP
Orthology - Evolution
OrthoDB10617
GeneTree (enSembl)ENSG00000124356
Phylogenetic Trees/Animal Genes : TreeFamSTAMBP
HOVERGENO95630
HOGENOMO95630
Homologs : HomoloGeneSTAMBP
Homology/Alignments : Family Browser (UCSC)STAMBP
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSTAMBP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)STAMBP
dbVarSTAMBP
ClinVarSTAMBP
1000_GenomesSTAMBP 
Exome Variant ServerSTAMBP
ExAC (Exome Aggregation Consortium)STAMBP (select the gene name)
Genetic variants : HAPMAP10617
Genomic Variants (DGV)STAMBP [DGVbeta]
DECIPHER (Syndromes)2:74056114-74094295  ENSG00000124356
CONAN: Copy Number AnalysisSTAMBP 
Mutations
ICGC Data PortalSTAMBP 
TCGA Data PortalSTAMBP 
Broad Tumor PortalSTAMBP
OASIS PortalSTAMBP [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSTAMBP  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSTAMBP
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch STAMBP
DgiDB (Drug Gene Interaction Database)STAMBP
DoCM (Curated mutations)STAMBP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)STAMBP (select a term)
intoGenSTAMBP
Cancer3DSTAMBP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606247    614261   
Orphanet20901   
MedgenSTAMBP
Genetic Testing Registry STAMBP
NextProtO95630 [Medical]
TSGene10617
GENETestsSTAMBP
Huge Navigator STAMBP [HugePedia]
snp3D : Map Gene to Disease10617
BioCentury BCIQSTAMBP
ClinGenSTAMBP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10617
Chemical/Pharm GKB GenePA134955569
Clinical trialSTAMBP
Miscellaneous
canSAR (ICR)STAMBP (select the gene name)
Probes
Litterature
PubMed72 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSTAMBP
EVEXSTAMBP
GoPubMedSTAMBP
iHOPSTAMBP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Thu Mar 30 15:21:10 CEST 2017

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