Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

STAMBPL1 (STAM binding protein like 1)

Identity

Alias_namesSTAM binding protein-like 1
Alias_symbol (synonym)AMSH-LP
KIAA1373
AMSH-FP
FLJ31524
ALMalpha
bA399O19.2
Other alias
HGNC (Hugo) STAMBPL1
LocusID (NCBI) 57559
Atlas_Id 52702
Location 10q23.31  [Link to chromosome band 10q23]
Location_base_pair Starts at 88880187 and ends at 88923502 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
FAT4 (4q28.1) / STAMBPL1 (10q23.31)LOC100507412 (-) / STAMBPL1 (10q23.31)SENP5 (3q29) / STAMBPL1 (10q23.31)
STAMBPL1 (10q23.31) / ATAD1 (10q23.31)STAMBPL1 (10q23.31) / FBXO21 (12q24.22)STAMBPL1 (10q23.31) / STAMBPL1 (10q23.31)
STAMBPL1 10q23.31 / ATAD1 10q23.31

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)STAMBPL1   24105
Cards
Entrez_Gene (NCBI)STAMBPL1  57559  STAM binding protein like 1
AliasesALMalpha; AMSH-FP; AMSH-LP; bA399O19.2
GeneCards (Weizmann)STAMBPL1
Ensembl hg19 (Hinxton)ENSG00000138134 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000138134 [Gene_View]  chr10:88880187-88923502 [Contig_View]  STAMBPL1 [Vega]
ICGC DataPortalENSG00000138134
TCGA cBioPortalSTAMBPL1
AceView (NCBI)STAMBPL1
Genatlas (Paris)STAMBPL1
WikiGenes57559
SOURCE (Princeton)STAMBPL1
Genetics Home Reference (NIH)STAMBPL1
Genomic and cartography
GoldenPath hg38 (UCSC)STAMBPL1  -     chr10:88880187-88923502 +  10q23.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)STAMBPL1  -     10q23.31   [Description]    (hg19-Feb_2009)
EnsemblSTAMBPL1 - 10q23.31 [CytoView hg19]  STAMBPL1 - 10q23.31 [CytoView hg38]
Mapping of homologs : NCBISTAMBPL1 [Mapview hg19]  STAMBPL1 [Mapview hg38]
OMIM612352   
Gene and transcription
Genbank (Entrez)AB010120 AB037794 AK056086 AK090678 AK092946
RefSeq transcript (Entrez)NM_020799
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)STAMBPL1
Cluster EST : UnigeneHs.701879 [ NCBI ]
CGAP (NCI)Hs.701879
Alternative Splicing GalleryENSG00000138134
Gene ExpressionSTAMBPL1 [ NCBI-GEO ]   STAMBPL1 [ EBI - ARRAY_EXPRESS ]   STAMBPL1 [ SEEK ]   STAMBPL1 [ MEM ]
Gene Expression Viewer (FireBrowse)STAMBPL1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57559
GTEX Portal (Tissue expression)STAMBPL1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96FJ0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96FJ0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96FJ0
Splice isoforms : SwissVarQ96FJ0
Catalytic activity : Enzyme3.4.19.- [ Enzyme-Expasy ]   3.4.19.-3.4.19.- [ IntEnz-EBI ]   3.4.19.- [ BRENDA ]   3.4.19.- [ KEGG ]   
PhosPhoSitePlusQ96FJ0
Domains : Interpro (EBI)JAMM/MPN+_dom    USP8_dimer   
Domain families : Pfam (Sanger)JAB (PF01398)    USP8_dimer (PF08969)   
Domain families : Pfam (NCBI)pfam01398    pfam08969   
Domain families : Smart (EMBL)JAB_MPN (SM00232)  
Conserved Domain (NCBI)STAMBPL1
DMDM Disease mutations57559
Blocks (Seattle)STAMBPL1
PDB (SRS)2ZNR    2ZNV   
PDB (PDBSum)2ZNR    2ZNV   
PDB (IMB)2ZNR    2ZNV   
PDB (RSDB)2ZNR    2ZNV   
Structural Biology KnowledgeBase2ZNR    2ZNV   
SCOP (Structural Classification of Proteins)2ZNR    2ZNV   
CATH (Classification of proteins structures)2ZNR    2ZNV   
SuperfamilyQ96FJ0
Human Protein AtlasENSG00000138134
Peptide AtlasQ96FJ0
HPRD16486
IPIIPI00290975   IPI00002208   IPI00640795   
Protein Interaction databases
DIP (DOE-UCLA)Q96FJ0
IntAct (EBI)Q96FJ0
FunCoupENSG00000138134
BioGRIDSTAMBPL1
STRING (EMBL)STAMBPL1
ZODIACSTAMBPL1
Ontologies - Pathways
QuickGOQ96FJ0
Ontology : AmiGOprotein binding  cytosol  metallopeptidase activity  membrane  protein deubiquitination  metal ion binding  Lys63-specific deubiquitinase activity  protein K63-linked deubiquitination  
Ontology : EGO-EBIprotein binding  cytosol  metallopeptidase activity  membrane  protein deubiquitination  metal ion binding  Lys63-specific deubiquitinase activity  protein K63-linked deubiquitination  
NDEx NetworkSTAMBPL1
Atlas of Cancer Signalling NetworkSTAMBPL1
Wikipedia pathwaysSTAMBPL1
Orthology - Evolution
OrthoDB57559
GeneTree (enSembl)ENSG00000138134
Phylogenetic Trees/Animal Genes : TreeFamSTAMBPL1
HOVERGENQ96FJ0
HOGENOMQ96FJ0
Homologs : HomoloGeneSTAMBPL1
Homology/Alignments : Family Browser (UCSC)STAMBPL1
Gene fusions - Rearrangements
Fusion : MitelmanSTAMBPL1/ATAD1 [10q23.31/10q23.31]  
Fusion: TCGASTAMBPL1 10q23.31 ATAD1 10q23.31 GBM
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSTAMBPL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)STAMBPL1
dbVarSTAMBPL1
ClinVarSTAMBPL1
1000_GenomesSTAMBPL1 
Exome Variant ServerSTAMBPL1
ExAC (Exome Aggregation Consortium)STAMBPL1 (select the gene name)
Genetic variants : HAPMAP57559
Genomic Variants (DGV)STAMBPL1 [DGVbeta]
DECIPHERSTAMBPL1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSTAMBPL1 
Mutations
ICGC Data PortalSTAMBPL1 
TCGA Data PortalSTAMBPL1 
Broad Tumor PortalSTAMBPL1
OASIS PortalSTAMBPL1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSTAMBPL1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSTAMBPL1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch STAMBPL1
DgiDB (Drug Gene Interaction Database)STAMBPL1
DoCM (Curated mutations)STAMBPL1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)STAMBPL1 (select a term)
intoGenSTAMBPL1
Cancer3DSTAMBPL1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612352   
Orphanet
MedgenSTAMBPL1
Genetic Testing Registry STAMBPL1
NextProtQ96FJ0 [Medical]
TSGene57559
GENETestsSTAMBPL1
Target ValidationSTAMBPL1
Huge Navigator STAMBPL1 [HugePedia]
snp3D : Map Gene to Disease57559
BioCentury BCIQSTAMBPL1
ClinGenSTAMBPL1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57559
Chemical/Pharm GKB GenePA142670864
Clinical trialSTAMBPL1
Miscellaneous
canSAR (ICR)STAMBPL1 (select the gene name)
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSTAMBPL1
EVEXSTAMBPL1
GoPubMedSTAMBPL1
iHOPSTAMBPL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 1 17:15:55 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.