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STAMBPL1 (STAM binding protein like 1)

Identity

Alias (NCBI)ALMalpha
AMSH-FP
AMSH-LP
bA399O19.2
HGNC (Hugo) STAMBPL1
HGNC Alias symbAMSH-LP
KIAA1373
AMSH-FP
FLJ31524
ALMalpha
bA399O19.2
HGNC Alias nameassociated molecule with the SH3 domain of STAM (AMSH) like protein
 associated molecule with the SH3 domain of STAM (AMSH) - Family Protein
HGNC Previous nameSTAM binding protein-like 1
LocusID (NCBI) 57559
Atlas_Id 52702
Location 10q23.31  [Link to chromosome band 10q23]
Location_base_pair Starts at 88880245 and ends at 88923487 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
FAT4 (4q28.1) / STAMBPL1 (10q23.31)LOC100507412 (-) / STAMBPL1 (10q23.31)SENP5 (3q29) / STAMBPL1 (10q23.31)
STAMBPL1 (10q23.31) / ATAD1 (10q23.31)STAMBPL1 (10q23.31) / FBXO21 (12q24.22)STAMBPL1 (10q23.31) / STAMBPL1 (10q23.31)
STAMBPL1 10q23.31 / ATAD1 10q23.31

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)STAMBPL1   24105
Cards
Entrez_Gene (NCBI)STAMBPL1    STAM binding protein like 1
AliasesALMalpha; AMSH-FP; AMSH-LP; bA399O19.2
GeneCards (Weizmann)STAMBPL1
Ensembl hg19 (Hinxton)ENSG00000138134 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000138134 [Gene_View]  ENSG00000138134 [Sequence]  chr10:88880245-88923487 [Contig_View]  STAMBPL1 [Vega]
ICGC DataPortalENSG00000138134
TCGA cBioPortalSTAMBPL1
AceView (NCBI)STAMBPL1
Genatlas (Paris)STAMBPL1
SOURCE (Princeton)STAMBPL1
Genetics Home Reference (NIH)STAMBPL1
Genomic and cartography
GoldenPath hg38 (UCSC)STAMBPL1  -     chr10:88880245-88923487 +  10q23.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)STAMBPL1  -     10q23.31   [Description]    (hg19-Feb_2009)
GoldenPathSTAMBPL1 - 10q23.31 [CytoView hg19]  STAMBPL1 - 10q23.31 [CytoView hg38]
ImmunoBaseENSG00000138134
Genome Data Viewer NCBISTAMBPL1 [Mapview hg19]  
OMIM612352   
Gene and transcription
Genbank (Entrez)AB010120 AB037794 AK056086 AK090678 AK092946
RefSeq transcript (Entrez)NM_020799
Consensus coding sequences : CCDS (NCBI)STAMBPL1
Gene ExpressionSTAMBPL1 [ NCBI-GEO ]   STAMBPL1 [ EBI - ARRAY_EXPRESS ]   STAMBPL1 [ SEEK ]   STAMBPL1 [ MEM ]
Gene Expression Viewer (FireBrowse)STAMBPL1 [ Firebrowse - Broad ]
GenevisibleExpression of STAMBPL1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57559
GTEX Portal (Tissue expression)STAMBPL1
Human Protein AtlasENSG00000138134-STAMBPL1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96FJ0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96FJ0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96FJ0
Catalytic activity : Enzyme3.4.19.- [ Enzyme-Expasy ]   3.4.19.-3.4.19.- [ IntEnz-EBI ]   3.4.19.- [ BRENDA ]   3.4.19.- [ KEGG ]   [ MEROPS ]
PhosPhoSitePlusQ96FJ0
Domaine pattern : Prosite (Expaxy)MPN (PS50249)   
Domains : Interpro (EBI)JAMM/MPN+_dom    MPN    STAMBP/STALP-like_MPN    USP8_dimer   
Domain families : Pfam (Sanger)JAB (PF01398)    USP8_dimer (PF08969)   
Domain families : Pfam (NCBI)pfam01398    pfam08969   
Domain families : Smart (EMBL)JAB_MPN (SM00232)  
Conserved Domain (NCBI)STAMBPL1
PDB (RSDB)2ZNR    2ZNV   
PDB Europe2ZNR    2ZNV   
PDB (PDBSum)2ZNR    2ZNV   
PDB (IMB)2ZNR    2ZNV   
Structural Biology KnowledgeBase2ZNR    2ZNV   
SCOP (Structural Classification of Proteins)2ZNR    2ZNV   
CATH (Classification of proteins structures)2ZNR    2ZNV   
SuperfamilyQ96FJ0
AlphaFold pdb e-kbQ96FJ0   
Human Protein Atlas [tissue]ENSG00000138134-STAMBPL1 [tissue]
HPRD16486
Protein Interaction databases
DIP (DOE-UCLA)Q96FJ0
IntAct (EBI)Q96FJ0
BioGRIDSTAMBPL1
STRING (EMBL)STAMBPL1
ZODIACSTAMBPL1
Ontologies - Pathways
QuickGOQ96FJ0
Ontology : AmiGOthiol-dependent deubiquitinase  protein binding  endosome  cytosol  metallopeptidase activity  membrane  membrane  protein deubiquitination  metal ion binding  Lys63-specific deubiquitinase activity  isopeptidase activity  protein K63-linked deubiquitination  
Ontology : EGO-EBIthiol-dependent deubiquitinase  protein binding  endosome  cytosol  metallopeptidase activity  membrane  membrane  protein deubiquitination  metal ion binding  Lys63-specific deubiquitinase activity  isopeptidase activity  protein K63-linked deubiquitination  
NDEx NetworkSTAMBPL1
Atlas of Cancer Signalling NetworkSTAMBPL1
Wikipedia pathwaysSTAMBPL1
Orthology - Evolution
OrthoDB57559
GeneTree (enSembl)ENSG00000138134
Phylogenetic Trees/Animal Genes : TreeFamSTAMBPL1
Homologs : HomoloGeneSTAMBPL1
Homology/Alignments : Family Browser (UCSC)STAMBPL1
Gene fusions - Rearrangements
Fusion : MitelmanSTAMBPL1/ATAD1 [10q23.31/10q23.31]  
Fusion : QuiverSTAMBPL1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSTAMBPL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)STAMBPL1
dbVarSTAMBPL1
ClinVarSTAMBPL1
MonarchSTAMBPL1
1000_GenomesSTAMBPL1 
Exome Variant ServerSTAMBPL1
GNOMAD BrowserENSG00000138134
Varsome BrowserSTAMBPL1
ACMGSTAMBPL1 variants
VarityQ96FJ0
Genomic Variants (DGV)STAMBPL1 [DGVbeta]
DECIPHERSTAMBPL1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSTAMBPL1 
Mutations
ICGC Data PortalSTAMBPL1 
TCGA Data PortalSTAMBPL1 
Broad Tumor PortalSTAMBPL1
OASIS PortalSTAMBPL1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSTAMBPL1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSTAMBPL1
Mutations and Diseases : HGMDSTAMBPL1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaSTAMBPL1
DgiDB (Drug Gene Interaction Database)STAMBPL1
DoCM (Curated mutations)STAMBPL1
CIViC (Clinical Interpretations of Variants in Cancer)STAMBPL1
Cancer3DSTAMBPL1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612352   
Orphanet
DisGeNETSTAMBPL1
MedgenSTAMBPL1
Genetic Testing Registry STAMBPL1
NextProtQ96FJ0 [Medical]
GENETestsSTAMBPL1
Target ValidationSTAMBPL1
Huge Navigator STAMBPL1 [HugePedia]
ClinGenSTAMBPL1
Clinical trials, drugs, therapy
MyCancerGenomeSTAMBPL1
Protein Interactions : CTDSTAMBPL1
Pharm GKB GenePA142670864
PharosQ96FJ0
Clinical trialSTAMBPL1
Miscellaneous
canSAR (ICR)STAMBPL1
HarmonizomeSTAMBPL1
DataMed IndexSTAMBPL1
Probes
Litterature
PubMed28 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSTAMBPL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:33:30 CEST 2021

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