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STAP2 (signal transducing adaptor family member 2)

Identity

Alias_symbol (synonym)STAP-2
BKS
Other alias
HGNC (Hugo) STAP2
LocusID (NCBI) 55620
Atlas_Id 52081
Location 19p13.3  [Link to chromosome band 19p13]
Location_base_pair Starts at 4324040 and ends at 4338847 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
EZH2 (7q36.1) / STAP2 (19p13.3)SNX13 (7p21.1) / STAP2 (19p13.3)SNX13 7p21.1 / STAP2 19p13.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)STAP2   30430
Cards
Entrez_Gene (NCBI)STAP2  55620  signal transducing adaptor family member 2
AliasesBKS
GeneCards (Weizmann)STAP2
Ensembl hg19 (Hinxton)ENSG00000178078 [Gene_View]  chr19:4324040-4338847 [Contig_View]  STAP2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000178078 [Gene_View]  chr19:4324040-4338847 [Contig_View]  STAP2 [Vega]
ICGC DataPortalENSG00000178078
TCGA cBioPortalSTAP2
AceView (NCBI)STAP2
Genatlas (Paris)STAP2
WikiGenes55620
SOURCE (Princeton)STAP2
Genetics Home Reference (NIH)STAP2
Genomic and cartography
GoldenPath hg19 (UCSC)STAP2  -     chr19:4324040-4338847 -  19p13.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)STAP2  -     19p13.3   [Description]    (hg38-Dec_2013)
EnsemblSTAP2 - 19p13.3 [CytoView hg19]  STAP2 - 19p13.3 [CytoView hg38]
Mapping of homologs : NCBISTAP2 [Mapview hg19]  STAP2 [Mapview hg38]
OMIM607881   
Gene and transcription
Genbank (Entrez)AJ245719 AK000241 AK125774 BC000795 BF677969
RefSeq transcript (Entrez)NM_001013841 NM_017720
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_011295 NW_004929412
Consensus coding sequences : CCDS (NCBI)STAP2
Cluster EST : UnigeneHs.194385 [ NCBI ]
CGAP (NCI)Hs.194385
Alternative Splicing GalleryENSG00000178078
Gene ExpressionSTAP2 [ NCBI-GEO ]   STAP2 [ EBI - ARRAY_EXPRESS ]   STAP2 [ SEEK ]   STAP2 [ MEM ]
Gene Expression Viewer (FireBrowse)STAP2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55620
GTEX Portal (Tissue expression)STAP2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UGK3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UGK3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UGK3
Splice isoforms : SwissVarQ9UGK3
PhosPhoSitePlusQ9UGK3
Domaine pattern : Prosite (Expaxy)SH2 (PS50001)   
Domains : Interpro (EBI)PH_dom-like    PH_domain    SH2   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)PH (SM00233)  SH2 (SM00252)  
Conserved Domain (NCBI)STAP2
DMDM Disease mutations55620
Blocks (Seattle)STAP2
PDB (SRS)2EL8   
PDB (PDBSum)2EL8   
PDB (IMB)2EL8   
PDB (RSDB)2EL8   
Structural Biology KnowledgeBase2EL8   
SCOP (Structural Classification of Proteins)2EL8   
CATH (Classification of proteins structures)2EL8   
SuperfamilyQ9UGK3
Human Protein AtlasENSG00000178078
Peptide AtlasQ9UGK3
HPRD07430
IPIIPI00383883   IPI00015096   
Protein Interaction databases
DIP (DOE-UCLA)Q9UGK3
IntAct (EBI)Q9UGK3
FunCoupENSG00000178078
BioGRIDSTAP2
STRING (EMBL)STAP2
ZODIACSTAP2
Ontologies - Pathways
QuickGOQ9UGK3
Ontology : AmiGOprotein binding  cytosol  plasma membrane  positive regulation of tyrosine phosphorylation of Stat3 protein  
Ontology : EGO-EBIprotein binding  cytosol  plasma membrane  positive regulation of tyrosine phosphorylation of Stat3 protein  
NDEx NetworkSTAP2
Atlas of Cancer Signalling NetworkSTAP2
Wikipedia pathwaysSTAP2
Orthology - Evolution
OrthoDB55620
GeneTree (enSembl)ENSG00000178078
Phylogenetic Trees/Animal Genes : TreeFamSTAP2
HOVERGENQ9UGK3
HOGENOMQ9UGK3
Homologs : HomoloGeneSTAP2
Homology/Alignments : Family Browser (UCSC)STAP2
Gene fusions - Rearrangements
Fusion : MitelmanSNX13/STAP2 [7p21.1/19p13.3]  [t(7;19)(p21;p13)]  
Fusion: TCGASNX13 7p21.1 STAP2 19p13.3 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSTAP2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)STAP2
dbVarSTAP2
ClinVarSTAP2
1000_GenomesSTAP2 
Exome Variant ServerSTAP2
ExAC (Exome Aggregation Consortium)STAP2 (select the gene name)
Genetic variants : HAPMAP55620
Genomic Variants (DGV)STAP2 [DGVbeta]
DECIPHER (Syndromes)19:4324040-4338847  ENSG00000178078
CONAN: Copy Number AnalysisSTAP2 
Mutations
ICGC Data PortalSTAP2 
TCGA Data PortalSTAP2 
Broad Tumor PortalSTAP2
OASIS PortalSTAP2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSTAP2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSTAP2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch STAP2
DgiDB (Drug Gene Interaction Database)STAP2
DoCM (Curated mutations)STAP2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)STAP2 (select a term)
intoGenSTAP2
Cancer3DSTAP2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607881   
Orphanet
MedgenSTAP2
Genetic Testing Registry STAP2
NextProtQ9UGK3 [Medical]
TSGene55620
GENETestsSTAP2
Huge Navigator STAP2 [HugePedia]
snp3D : Map Gene to Disease55620
BioCentury BCIQSTAP2
ClinGenSTAP2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55620
Chemical/Pharm GKB GenePA162404971
Clinical trialSTAP2
Miscellaneous
canSAR (ICR)STAP2 (select the gene name)
Probes
Litterature
PubMed26 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSTAP2
EVEXSTAP2
GoPubMedSTAP2
iHOPSTAP2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:29:33 CET 2017

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