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STAP2 (signal transducing adaptor family member 2)

Identity

Alias (NCBI)BKS
HGNC (Hugo) STAP2
HGNC Alias symbSTAP-2
BKS
LocusID (NCBI) 55620
Atlas_Id 52081
Location 19p13.3  [Link to chromosome band 19p13]
Location_base_pair Starts at 4324043 and ends at 4338827 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
EZH2 (7q36.1)::STAP2 (19p13.3)SNX13 (7p21.1)::STAP2 (19p13.3)SNX13 7p21.1::STAP2 19p13.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)STAP2   30430
Cards
Entrez_Gene (NCBI)STAP2    signal transducing adaptor family member 2
AliasesBKS
GeneCards (Weizmann)STAP2
Ensembl hg19 (Hinxton)ENSG00000178078 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000178078 [Gene_View]  ENSG00000178078 [Sequence]  chr19:4324043-4338827 [Contig_View]  STAP2 [Vega]
ICGC DataPortalENSG00000178078
TCGA cBioPortalSTAP2
AceView (NCBI)STAP2
Genatlas (Paris)STAP2
SOURCE (Princeton)STAP2
Genetics Home Reference (NIH)STAP2
Genomic and cartography
GoldenPath hg38 (UCSC)STAP2  -     chr19:4324043-4338827 -  19p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)STAP2  -     19p13.3   [Description]    (hg19-Feb_2009)
GoldenPathSTAP2 - 19p13.3 [CytoView hg19]  STAP2 - 19p13.3 [CytoView hg38]
ImmunoBaseENSG00000178078
Genome Data Viewer NCBISTAP2 [Mapview hg19]  
OMIM607881   
Gene and transcription
Genbank (Entrez)AJ245719 AK000241 AK125774 BC000795 BF677969
RefSeq transcript (Entrez)NM_001013841 NM_017720
Consensus coding sequences : CCDS (NCBI)STAP2
Gene ExpressionSTAP2 [ NCBI-GEO ]   STAP2 [ EBI - ARRAY_EXPRESS ]   STAP2 [ SEEK ]   STAP2 [ MEM ]
Gene Expression Viewer (FireBrowse)STAP2 [ Firebrowse - Broad ]
GenevisibleExpression of STAP2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55620
GTEX Portal (Tissue expression)STAP2
Human Protein AtlasENSG00000178078-STAP2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UGK3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UGK3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UGK3
PhosPhoSitePlusQ9UGK3
Domaine pattern : Prosite (Expaxy)SH2 (PS50001)   
Domains : Interpro (EBI)PH-like_dom_sf    SH2    SH2_dom_sf    STAP1/STAP2    STAP2_SH2   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)STAP2
PDB (RSDB)2EL8   
PDB Europe2EL8   
PDB (PDBSum)2EL8   
PDB (IMB)2EL8   
Structural Biology KnowledgeBase2EL8   
SCOP (Structural Classification of Proteins)2EL8   
CATH (Classification of proteins structures)2EL8   
SuperfamilyQ9UGK3
AlphaFold pdb e-kbQ9UGK3   
Human Protein Atlas [tissue]ENSG00000178078-STAP2 [tissue]
HPRD07430
Protein Interaction databases
DIP (DOE-UCLA)Q9UGK3
IntAct (EBI)Q9UGK3
BioGRIDSTAP2
STRING (EMBL)STAP2
ZODIACSTAP2
Ontologies - Pathways
QuickGOQ9UGK3
Ontology : AmiGOprotein binding  cytosol  plasma membrane  signaling adaptor activity  
Ontology : EGO-EBIprotein binding  cytosol  plasma membrane  signaling adaptor activity  
NDEx NetworkSTAP2
Atlas of Cancer Signalling NetworkSTAP2
Wikipedia pathwaysSTAP2
Orthology - Evolution
OrthoDB55620
GeneTree (enSembl)ENSG00000178078
Phylogenetic Trees/Animal Genes : TreeFamSTAP2
Homologs : HomoloGeneSTAP2
Homology/Alignments : Family Browser (UCSC)STAP2
Gene fusions - Rearrangements
Fusion : MitelmanSNX13::STAP2 [7p21.1/19p13.3]  
Fusion : QuiverSTAP2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSTAP2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)STAP2
dbVarSTAP2
ClinVarSTAP2
MonarchSTAP2
1000_GenomesSTAP2 
Exome Variant ServerSTAP2
GNOMAD BrowserENSG00000178078
Varsome BrowserSTAP2
ACMGSTAP2 variants
VarityQ9UGK3
Genomic Variants (DGV)STAP2 [DGVbeta]
DECIPHERSTAP2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSTAP2 
Mutations
ICGC Data PortalSTAP2 
TCGA Data PortalSTAP2 
Broad Tumor PortalSTAP2
OASIS PortalSTAP2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSTAP2  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSTAP2
Mutations and Diseases : HGMDSTAP2
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaSTAP2
DgiDB (Drug Gene Interaction Database)STAP2
DoCM (Curated mutations)STAP2
CIViC (Clinical Interpretations of Variants in Cancer)STAP2
Cancer3DSTAP2
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607881   
Orphanet
DisGeNETSTAP2
MedgenSTAP2
Genetic Testing Registry STAP2
NextProtQ9UGK3 [Medical]
GENETestsSTAP2
Target ValidationSTAP2
Huge Navigator STAP2 [HugePedia]
ClinGenSTAP2
Clinical trials, drugs, therapy
MyCancerGenomeSTAP2
Protein Interactions : CTDSTAP2
Pharm GKB GenePA162404971
PharosQ9UGK3
Clinical trialSTAP2
Miscellaneous
canSAR (ICR)STAP2
HarmonizomeSTAP2
ARCHS4STAP2
DataMed IndexSTAP2
Probes
Litterature
PubMed33 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSTAP2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Jan 20 13:01:11 CET 2022

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