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STARD10 (StAR related lipid transfer domain containing 10)

Identity

Alias_namesSDCCAG28
serologically defined colon cancer antigen 28
START domain containing 10
Alias_symbol (synonym)NY-CO-28
CGI-52
PCTP2
Other alias
HGNC (Hugo) STARD10
LocusID (NCBI) 10809
Atlas_Id 42428
Location 11q13.4  [Link to chromosome band 11q13]
Location_base_pair Starts at 72754729 and ends at 72793705 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CLPB (11q13.4) / STARD10 (11q13.4)STARD10 (11q13.4) / CLTCL1 (22q11.21)STARD10 (11q13.4) / FCHSD2 (11q13.4)
CLPB 11q13.4 / STARD10 11q13.4STARD10 11q13.4 / CLTCL1 22q11.21

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)STARD10   10666
Cards
Entrez_Gene (NCBI)STARD10  10809  StAR related lipid transfer domain containing 10
AliasesCGI-52; NY-CO-28; PCTP2; SDCCAG28
GeneCards (Weizmann)STARD10
Ensembl hg19 (Hinxton)ENSG00000214530 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000214530 [Gene_View]  chr11:72754729-72793705 [Contig_View]  STARD10 [Vega]
ICGC DataPortalENSG00000214530
TCGA cBioPortalSTARD10
AceView (NCBI)STARD10
Genatlas (Paris)STARD10
WikiGenes10809
SOURCE (Princeton)STARD10
Genetics Home Reference (NIH)STARD10
Genomic and cartography
GoldenPath hg38 (UCSC)STARD10  -     chr11:72754729-72793705 -  11q13.4   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)STARD10  -     11q13.4   [Description]    (hg19-Feb_2009)
EnsemblSTARD10 - 11q13.4 [CytoView hg19]  STARD10 - 11q13.4 [CytoView hg38]
Mapping of homologs : NCBISTARD10 [Mapview hg19]  STARD10 [Mapview hg38]
OMIM617382   
Gene and transcription
Genbank (Entrez)AF039696 AF151810 AK095668 AK310301 AK315255
RefSeq transcript (Entrez)NM_006645
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)STARD10
Cluster EST : UnigeneHs.188606 [ NCBI ]
CGAP (NCI)Hs.188606
Alternative Splicing GalleryENSG00000214530
Gene ExpressionSTARD10 [ NCBI-GEO ]   STARD10 [ EBI - ARRAY_EXPRESS ]   STARD10 [ SEEK ]   STARD10 [ MEM ]
Gene Expression Viewer (FireBrowse)STARD10 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10809
GTEX Portal (Tissue expression)STARD10
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y365   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y365  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y365
Splice isoforms : SwissVarQ9Y365
PhosPhoSitePlusQ9Y365
Domaine pattern : Prosite (Expaxy)START (PS50848)   
Domains : Interpro (EBI)START-like_dom    START_lipid-bd_dom   
Domain families : Pfam (Sanger)START (PF01852)   
Domain families : Pfam (NCBI)pfam01852   
Domain families : Smart (EMBL)START (SM00234)  
Conserved Domain (NCBI)STARD10
DMDM Disease mutations10809
Blocks (Seattle)STARD10
SuperfamilyQ9Y365
Human Protein AtlasENSG00000214530
Peptide AtlasQ9Y365
HPRD18116
IPIIPI00186008   IPI01009673   IPI01009196   IPI01015270   IPI01010352   IPI01014618   IPI01015084   IPI01015519   IPI01015950   IPI01014072   IPI01012797   IPI01011545   IPI01013724   IPI01009143   IPI01009601   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y365
IntAct (EBI)Q9Y365
FunCoupENSG00000214530
BioGRIDSTARD10
STRING (EMBL)STARD10
ZODIACSTARD10
Ontologies - Pathways
QuickGOQ9Y365
Ontology : AmiGOprotein binding  cytosol  cytosol  microvillus  phosphatidylcholine biosynthetic process  lipid binding  membrane  bile acid secretion  positive regulation of peroxisome proliferator activated receptor signaling pathway  intercellular canaliculus  
Ontology : EGO-EBIprotein binding  cytosol  cytosol  microvillus  phosphatidylcholine biosynthetic process  lipid binding  membrane  bile acid secretion  positive regulation of peroxisome proliferator activated receptor signaling pathway  intercellular canaliculus  
NDEx NetworkSTARD10
Atlas of Cancer Signalling NetworkSTARD10
Wikipedia pathwaysSTARD10
Orthology - Evolution
OrthoDB10809
GeneTree (enSembl)ENSG00000214530
Phylogenetic Trees/Animal Genes : TreeFamSTARD10
HOVERGENQ9Y365
HOGENOMQ9Y365
Homologs : HomoloGeneSTARD10
Homology/Alignments : Family Browser (UCSC)STARD10
Gene fusions - Rearrangements
Fusion : MitelmanCLPB/STARD10 [11q13.4/11q13.4]  [t(11;11)(q13;q13)]  
Fusion : MitelmanSTARD10/CLTCL1 [11q13.4/22q11.21]  [t(11;22)(q13;q11)]  
Fusion: TCGACLPB 11q13.4 STARD10 11q13.4 BRCA
Fusion: TCGASTARD10 11q13.4 CLTCL1 22q11.21 SKCM
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSTARD10 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)STARD10
dbVarSTARD10
ClinVarSTARD10
1000_GenomesSTARD10 
Exome Variant ServerSTARD10
ExAC (Exome Aggregation Consortium)STARD10 (select the gene name)
Genetic variants : HAPMAP10809
Genomic Variants (DGV)STARD10 [DGVbeta]
DECIPHERSTARD10 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSTARD10 
Mutations
ICGC Data PortalSTARD10 
TCGA Data PortalSTARD10 
Broad Tumor PortalSTARD10
OASIS PortalSTARD10 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSTARD10  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSTARD10
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch STARD10
DgiDB (Drug Gene Interaction Database)STARD10
DoCM (Curated mutations)STARD10 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)STARD10 (select a term)
intoGenSTARD10
Cancer3DSTARD10(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617382   
Orphanet
MedgenSTARD10
Genetic Testing Registry STARD10
NextProtQ9Y365 [Medical]
TSGene10809
GENETestsSTARD10
Target ValidationSTARD10
Huge Navigator STARD10 [HugePedia]
snp3D : Map Gene to Disease10809
BioCentury BCIQSTARD10
ClinGenSTARD10
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10809
Chemical/Pharm GKB GenePA35596
Clinical trialSTARD10
Miscellaneous
canSAR (ICR)STARD10 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSTARD10
EVEXSTARD10
GoPubMedSTARD10
iHOPSTARD10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 17:15:55 CEST 2017

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