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STARD10 (StAR related lipid transfer domain containing 10)

Identity

Alias (NCBI)CGI-52
NY-CO-28
PCTP2
SDCCAG28
HGNC (Hugo) STARD10
HGNC Alias symbNY-CO-28
CGI-52
PCTP2
HGNC Previous nameSDCCAG28
HGNC Previous nameserologically defined colon cancer antigen 28
 START domain containing 10
LocusID (NCBI) 10809
Atlas_Id 42428
Location 11q13.4  [Link to chromosome band 11q13]
Location_base_pair Starts at 72754729 and ends at 72793705 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CLPB (11q13.4)::STARD10 (11q13.4)STARD10 (11q13.4)::CLTCL1 (22q11.21)STARD10 (11q13.4)::FCHSD2 (11q13.4)
CLPB 11q13.4::STARD10 11q13.4STARD10 11q13.4::CLTCL1 22q11.21

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)STARD10   10666
Cards
Entrez_Gene (NCBI)STARD10    StAR related lipid transfer domain containing 10
AliasesCGI-52; NY-CO-28; PCTP2; SDCCAG28
GeneCards (Weizmann)STARD10
Ensembl hg19 (Hinxton)ENSG00000214530 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000214530 [Gene_View]  ENSG00000214530 [Sequence]  chr11:72754729-72793705 [Contig_View]  STARD10 [Vega]
ICGC DataPortalENSG00000214530
TCGA cBioPortalSTARD10
AceView (NCBI)STARD10
Genatlas (Paris)STARD10
SOURCE (Princeton)STARD10
Genetics Home Reference (NIH)STARD10
Genomic and cartography
GoldenPath hg38 (UCSC)STARD10  -     chr11:72754729-72793705 -  11q13.4   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)STARD10  -     11q13.4   [Description]    (hg19-Feb_2009)
GoldenPathSTARD10 - 11q13.4 [CytoView hg19]  STARD10 - 11q13.4 [CytoView hg38]
ImmunoBaseENSG00000214530
Genome Data Viewer NCBISTARD10 [Mapview hg19]  
OMIM617382   
Gene and transcription
Genbank (Entrez)AF039696 AF151810 AK095668 AK310301 AK315255
RefSeq transcript (Entrez)NM_006645
Consensus coding sequences : CCDS (NCBI)STARD10
Gene ExpressionSTARD10 [ NCBI-GEO ]   STARD10 [ EBI - ARRAY_EXPRESS ]   STARD10 [ SEEK ]   STARD10 [ MEM ]
Gene Expression Viewer (FireBrowse)STARD10 [ Firebrowse - Broad ]
GenevisibleExpression of STARD10 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10809
GTEX Portal (Tissue expression)STARD10
Human Protein AtlasENSG00000214530-STARD10 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y365   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y365  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y365
PhosPhoSitePlusQ9Y365
Domaine pattern : Prosite (Expaxy)START (PS50848)   
Domains : Interpro (EBI)STARD10_START    START-like_dom_sf    START_lipid-bd_dom   
Domain families : Pfam (Sanger)START (PF01852)   
Domain families : Pfam (NCBI)pfam01852   
Domain families : Smart (EMBL)START (SM00234)  
Conserved Domain (NCBI)STARD10
PDB (RSDB)6SER   
PDB Europe6SER   
PDB (PDBSum)6SER   
PDB (IMB)6SER   
Structural Biology KnowledgeBase6SER   
SCOP (Structural Classification of Proteins)6SER   
CATH (Classification of proteins structures)6SER   
SuperfamilyQ9Y365
AlphaFold pdb e-kbQ9Y365   
Human Protein Atlas [tissue]ENSG00000214530-STARD10 [tissue]
HPRD18116
Protein Interaction databases
DIP (DOE-UCLA)Q9Y365
IntAct (EBI)Q9Y365
BioGRIDSTARD10
STRING (EMBL)STARD10
ZODIACSTARD10
Ontologies - Pathways
QuickGOQ9Y365
Ontology : AmiGOprotein binding  cytosol  cytosol  cytosol  microvillus  phosphatidylcholine biosynthetic process  lipid transport  lipid binding  membrane  motile cilium  intercellular canaliculus  
Ontology : EGO-EBIprotein binding  cytosol  cytosol  cytosol  microvillus  phosphatidylcholine biosynthetic process  lipid transport  lipid binding  membrane  motile cilium  intercellular canaliculus  
NDEx NetworkSTARD10
Atlas of Cancer Signalling NetworkSTARD10
Wikipedia pathwaysSTARD10
Orthology - Evolution
OrthoDB10809
GeneTree (enSembl)ENSG00000214530
Phylogenetic Trees/Animal Genes : TreeFamSTARD10
Homologs : HomoloGeneSTARD10
Homology/Alignments : Family Browser (UCSC)STARD10
Gene fusions - Rearrangements
Fusion : MitelmanCLPB::STARD10 [11q13.4/11q13.4]  
Fusion : MitelmanSTARD10::CLTCL1 [11q13.4/22q11.21]  
Fusion : QuiverSTARD10
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSTARD10 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)STARD10
dbVarSTARD10
ClinVarSTARD10
MonarchSTARD10
1000_GenomesSTARD10 
Exome Variant ServerSTARD10
GNOMAD BrowserENSG00000214530
Varsome BrowserSTARD10
ACMGSTARD10 variants
VarityQ9Y365
Genomic Variants (DGV)STARD10 [DGVbeta]
DECIPHERSTARD10 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSTARD10 
Mutations
ICGC Data PortalSTARD10 
TCGA Data PortalSTARD10 
Broad Tumor PortalSTARD10
OASIS PortalSTARD10 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSTARD10  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSTARD10
Mutations and Diseases : HGMDSTARD10
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaSTARD10
DgiDB (Drug Gene Interaction Database)STARD10
DoCM (Curated mutations)STARD10
CIViC (Clinical Interpretations of Variants in Cancer)STARD10
Cancer3DSTARD10
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617382   
Orphanet
DisGeNETSTARD10
MedgenSTARD10
Genetic Testing Registry STARD10
NextProtQ9Y365 [Medical]
GENETestsSTARD10
Target ValidationSTARD10
Huge Navigator STARD10 [HugePedia]
ClinGenSTARD10
Clinical trials, drugs, therapy
MyCancerGenomeSTARD10
Protein Interactions : CTDSTARD10
Pharm GKB GenePA35596
PharosQ9Y365
Clinical trialSTARD10
Miscellaneous
canSAR (ICR)STARD10
HarmonizomeSTARD10
ARCHS4STARD10
DataMed IndexSTARD10
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSTARD10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sun Jan 16 18:35:52 CET 2022

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