Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

STARD3NL (STARD3 N-terminal like)

Identity

Alias_symbol (synonym)MENTHO
MGC3251
Other alias
HGNC (Hugo) STARD3NL
LocusID (NCBI) 83930
Atlas_Id 74294
Location 7p14.1  [Link to chromosome band 7p14]
Location_base_pair Starts at 38178206 and ends at 38230671 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CABLES1 (18q11.2) / STARD3NL (7p14.1)STARD3NL (7p14.1) / PAPD7 (5p15.31)STARD3NL (7p14.1) / STARD3NL (7p14.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)STARD3NL   19169
Cards
Entrez_Gene (NCBI)STARD3NL  83930  STARD3 N-terminal like
AliasesMENTHO
GeneCards (Weizmann)STARD3NL
Ensembl hg19 (Hinxton)ENSG00000010270 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000010270 [Gene_View]  chr7:38178206-38230671 [Contig_View]  STARD3NL [Vega]
ICGC DataPortalENSG00000010270
TCGA cBioPortalSTARD3NL
AceView (NCBI)STARD3NL
Genatlas (Paris)STARD3NL
WikiGenes83930
SOURCE (Princeton)STARD3NL
Genetics Home Reference (NIH)STARD3NL
Genomic and cartography
GoldenPath hg38 (UCSC)STARD3NL  -     chr7:38178206-38230671 +  7p14.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)STARD3NL  -     7p14.1   [Description]    (hg19-Feb_2009)
EnsemblSTARD3NL - 7p14.1 [CytoView hg19]  STARD3NL - 7p14.1 [CytoView hg38]
Mapping of homologs : NCBISTARD3NL [Mapview hg19]  STARD3NL [Mapview hg38]
OMIM611759   
Gene and transcription
Genbank (Entrez)AI289220 AJ492267 AK091579 AK315404 AY358645
RefSeq transcript (Entrez)NM_032016
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)STARD3NL
Cluster EST : UnigeneHs.744885 [ NCBI ]
CGAP (NCI)Hs.744885
Alternative Splicing GalleryENSG00000010270
Gene ExpressionSTARD3NL [ NCBI-GEO ]   STARD3NL [ EBI - ARRAY_EXPRESS ]   STARD3NL [ SEEK ]   STARD3NL [ MEM ]
Gene Expression Viewer (FireBrowse)STARD3NL [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83930
GTEX Portal (Tissue expression)STARD3NL
Protein : pattern, domain, 3D structure
UniProt/SwissProtO95772   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO95772  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO95772
Splice isoforms : SwissVarO95772
PhosPhoSitePlusO95772
Domaine pattern : Prosite (Expaxy)MENTAL (PS51439)   
Domains : Interpro (EBI)MENTAL   
Domain families : Pfam (Sanger)MENTAL (PF10457)   
Domain families : Pfam (NCBI)pfam10457   
Conserved Domain (NCBI)STARD3NL
DMDM Disease mutations83930
Blocks (Seattle)STARD3NL
SuperfamilyO95772
Human Protein AtlasENSG00000010270
Peptide AtlasO95772
HPRD18117
IPIIPI00012434   IPI00759702   IPI00816092   IPI00925710   IPI00925460   IPI00925289   IPI00925069   
Protein Interaction databases
DIP (DOE-UCLA)O95772
IntAct (EBI)O95772
FunCoupENSG00000010270
BioGRIDSTARD3NL
STRING (EMBL)STARD3NL
ZODIACSTARD3NL
Ontologies - Pathways
QuickGOO95772
Ontology : AmiGOlysosomal membrane  cytosol  C21-steroid hormone biosynthetic process  cholesterol binding  membrane  integral component of membrane  late endosome membrane  intracellular membrane-bounded organelle  
Ontology : EGO-EBIlysosomal membrane  cytosol  C21-steroid hormone biosynthetic process  cholesterol binding  membrane  integral component of membrane  late endosome membrane  intracellular membrane-bounded organelle  
NDEx NetworkSTARD3NL
Atlas of Cancer Signalling NetworkSTARD3NL
Wikipedia pathwaysSTARD3NL
Orthology - Evolution
OrthoDB83930
GeneTree (enSembl)ENSG00000010270
Phylogenetic Trees/Animal Genes : TreeFamSTARD3NL
HOVERGENO95772
HOGENOMO95772
Homologs : HomoloGeneSTARD3NL
Homology/Alignments : Family Browser (UCSC)STARD3NL
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSTARD3NL [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)STARD3NL
dbVarSTARD3NL
ClinVarSTARD3NL
1000_GenomesSTARD3NL 
Exome Variant ServerSTARD3NL
ExAC (Exome Aggregation Consortium)STARD3NL (select the gene name)
Genetic variants : HAPMAP83930
Genomic Variants (DGV)STARD3NL [DGVbeta]
DECIPHERSTARD3NL [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSTARD3NL 
Mutations
ICGC Data PortalSTARD3NL 
TCGA Data PortalSTARD3NL 
Broad Tumor PortalSTARD3NL
OASIS PortalSTARD3NL [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSTARD3NL  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSTARD3NL
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch STARD3NL
DgiDB (Drug Gene Interaction Database)STARD3NL
DoCM (Curated mutations)STARD3NL (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)STARD3NL (select a term)
intoGenSTARD3NL
Cancer3DSTARD3NL(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611759   
Orphanet
MedgenSTARD3NL
Genetic Testing Registry STARD3NL
NextProtO95772 [Medical]
TSGene83930
GENETestsSTARD3NL
Target ValidationSTARD3NL
Huge Navigator STARD3NL [HugePedia]
snp3D : Map Gene to Disease83930
BioCentury BCIQSTARD3NL
ClinGenSTARD3NL
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD83930
Chemical/Pharm GKB GenePA134990065
Clinical trialSTARD3NL
Miscellaneous
canSAR (ICR)STARD3NL (select the gene name)
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSTARD3NL
EVEXSTARD3NL
GoPubMedSTARD3NL
iHOPSTARD3NL
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:44:20 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.