Atlas of Genetics and Cytogenetics in Oncology and Haematology


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STARD4-AS1 (STARD4 antisense RNA 1)

Identity

Alias_namesSTARD4 antisense RNA 1 (non-protein coding)
Other alias-
HGNC (Hugo) STARD4-AS1
LocusID (NCBI) 100505678
Atlas_Id 74295
Location 5q22.1  [Link to chromosome band 5q22]
Location_base_pair Starts at 111512226 and ends at 111739726 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)STARD4-AS1   44117
Cards
Entrez_Gene (NCBI)STARD4-AS1  100505678  STARD4 antisense RNA 1
Aliases
GeneCards (Weizmann)STARD4-AS1
Ensembl hg19 (Hinxton)ENSG00000246859 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000246859 [Gene_View]  chr5:111512226-111739726 [Contig_View]  STARD4-AS1 [Vega]
ICGC DataPortalENSG00000246859
TCGA cBioPortalSTARD4-AS1
AceView (NCBI)STARD4-AS1
Genatlas (Paris)STARD4-AS1
WikiGenes100505678
SOURCE (Princeton)STARD4-AS1
Genetics Home Reference (NIH)STARD4-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)STARD4-AS1  -     chr5:111512226-111739726 +  5q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)STARD4-AS1  -     5q22.1   [Description]    (hg19-Feb_2009)
EnsemblSTARD4-AS1 - 5q22.1 [CytoView hg19]  STARD4-AS1 - 5q22.1 [CytoView hg38]
Mapping of homologs : NCBISTARD4-AS1 [Mapview hg19]  STARD4-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)CR749489
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)STARD4-AS1
Cluster EST : UnigeneHs.745061 [ NCBI ]
CGAP (NCI)Hs.745061
Alternative Splicing GalleryENSG00000246859
Gene ExpressionSTARD4-AS1 [ NCBI-GEO ]   STARD4-AS1 [ EBI - ARRAY_EXPRESS ]   STARD4-AS1 [ SEEK ]   STARD4-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)STARD4-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100505678
GTEX Portal (Tissue expression)STARD4-AS1
Human Protein AtlasENSG00000246859-STARD4-AS1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)STARD4-AS1
DMDM Disease mutations100505678
Blocks (Seattle)STARD4-AS1
Human Protein Atlas [tissue]ENSG00000246859-STARD4-AS1 [tissue]
Protein Interaction databases
FunCoupENSG00000246859
BioGRIDSTARD4-AS1
STRING (EMBL)STARD4-AS1
ZODIACSTARD4-AS1
Ontologies - Pathways
Huge Navigator STARD4-AS1 [HugePedia]
snp3D : Map Gene to Disease100505678
BioCentury BCIQSTARD4-AS1
ClinGenSTARD4-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100505678
Clinical trialSTARD4-AS1
Miscellaneous
canSAR (ICR)STARD4-AS1 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSTARD4-AS1
EVEXSTARD4-AS1
GoPubMedSTARD4-AS1
iHOPSTARD4-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:31:11 CET 2017

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