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STARD4 (StAR related lipid transfer domain containing 4)

Identity

Alias_namesSTART domain containing 4
Other alias-
HGNC (Hugo) STARD4
LocusID (NCBI) 134429
Atlas_Id 47411
Location 5q22.1  [Link to chromosome band 5q22]
Location_base_pair Starts at 111496035 and ends at 111512597 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)STARD4   18058
Cards
Entrez_Gene (NCBI)STARD4  134429  StAR related lipid transfer domain containing 4
Aliases
GeneCards (Weizmann)STARD4
Ensembl hg19 (Hinxton)ENSG00000164211 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000164211 [Gene_View]  chr5:111496035-111512597 [Contig_View]  STARD4 [Vega]
ICGC DataPortalENSG00000164211
TCGA cBioPortalSTARD4
AceView (NCBI)STARD4
Genatlas (Paris)STARD4
WikiGenes134429
SOURCE (Princeton)STARD4
Genetics Home Reference (NIH)STARD4
Genomic and cartography
GoldenPath hg38 (UCSC)STARD4  -     chr5:111496035-111512597 -  5q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)STARD4  -     5q22.1   [Description]    (hg19-Feb_2009)
EnsemblSTARD4 - 5q22.1 [CytoView hg19]  STARD4 - 5q22.1 [CytoView hg38]
Mapping of homologs : NCBISTARD4 [Mapview hg19]  STARD4 [Mapview hg38]
OMIM607049   
Gene and transcription
Genbank (Entrez)AF480299 AK026207 AK054566 AK125317 AK290312
RefSeq transcript (Entrez)NM_001308056 NM_001308057 NM_001308058 NM_001308059 NM_001308060 NM_001308061 NM_139164
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)STARD4
Cluster EST : UnigeneHs.732430 [ NCBI ]
CGAP (NCI)Hs.732430
Alternative Splicing GalleryENSG00000164211
Gene ExpressionSTARD4 [ NCBI-GEO ]   STARD4 [ EBI - ARRAY_EXPRESS ]   STARD4 [ SEEK ]   STARD4 [ MEM ]
Gene Expression Viewer (FireBrowse)STARD4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)134429
GTEX Portal (Tissue expression)STARD4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96DR4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96DR4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96DR4
Splice isoforms : SwissVarQ96DR4
PhosPhoSitePlusQ96DR4
Domaine pattern : Prosite (Expaxy)START (PS50848)   
Domains : Interpro (EBI)START-like_dom    START_lipid-bd_dom   
Domain families : Pfam (Sanger)START (PF01852)   
Domain families : Pfam (NCBI)pfam01852   
Domain families : Smart (EMBL)START (SM00234)  
Conserved Domain (NCBI)STARD4
DMDM Disease mutations134429
Blocks (Seattle)STARD4
SuperfamilyQ96DR4
Human Protein AtlasENSG00000164211
Peptide AtlasQ96DR4
HPRD06133
IPIIPI00061112   IPI00384111   IPI00965472   IPI00966280   IPI00967199   
Protein Interaction databases
DIP (DOE-UCLA)Q96DR4
IntAct (EBI)Q96DR4
FunCoupENSG00000164211
BioGRIDSTARD4
STRING (EMBL)STARD4
ZODIACSTARD4
Ontologies - Pathways
QuickGOQ96DR4
Ontology : AmiGOmitochondrion  positive regulation of cholesterol esterification  cholesterol transport involved in cholesterol storage  cholesterol binding  cholesterol transporter activity  cytoplasmic vesicle  intracellular cholesterol transport  cholesterol import  positive regulation of bile acid biosynthetic process  
Ontology : EGO-EBImitochondrion  positive regulation of cholesterol esterification  cholesterol transport involved in cholesterol storage  cholesterol binding  cholesterol transporter activity  cytoplasmic vesicle  intracellular cholesterol transport  cholesterol import  positive regulation of bile acid biosynthetic process  
NDEx NetworkSTARD4
Atlas of Cancer Signalling NetworkSTARD4
Wikipedia pathwaysSTARD4
Orthology - Evolution
OrthoDB134429
GeneTree (enSembl)ENSG00000164211
Phylogenetic Trees/Animal Genes : TreeFamSTARD4
HOVERGENQ96DR4
HOGENOMQ96DR4
Homologs : HomoloGeneSTARD4
Homology/Alignments : Family Browser (UCSC)STARD4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSTARD4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)STARD4
dbVarSTARD4
ClinVarSTARD4
1000_GenomesSTARD4 
Exome Variant ServerSTARD4
ExAC (Exome Aggregation Consortium)STARD4 (select the gene name)
Genetic variants : HAPMAP134429
Genomic Variants (DGV)STARD4 [DGVbeta]
DECIPHERSTARD4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSTARD4 
Mutations
ICGC Data PortalSTARD4 
TCGA Data PortalSTARD4 
Broad Tumor PortalSTARD4
OASIS PortalSTARD4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSTARD4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSTARD4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch STARD4
DgiDB (Drug Gene Interaction Database)STARD4
DoCM (Curated mutations)STARD4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)STARD4 (select a term)
intoGenSTARD4
Cancer3DSTARD4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607049   
Orphanet
MedgenSTARD4
Genetic Testing Registry STARD4
NextProtQ96DR4 [Medical]
TSGene134429
GENETestsSTARD4
Target ValidationSTARD4
Huge Navigator STARD4 [HugePedia]
snp3D : Map Gene to Disease134429
BioCentury BCIQSTARD4
ClinGenSTARD4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD134429
Chemical/Pharm GKB GenePA38284
Clinical trialSTARD4
Miscellaneous
canSAR (ICR)STARD4 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSTARD4
EVEXSTARD4
GoPubMedSTARD4
iHOPSTARD4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 17:15:56 CEST 2017

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