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STARD5 (StAR related lipid transfer domain containing 5)

Identity

Alias_namesSTART domain containing 5
Alias_symbol (synonym)MGC10327
Other alias-
HGNC (Hugo) STARD5
LocusID (NCBI) 80765
Atlas_Id 74296
Location 15q25.1  [Link to chromosome band 15q25]
Location_base_pair Starts at 81312666 and ends at 81324183 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)STARD5   18065
Cards
Entrez_Gene (NCBI)STARD5  80765  StAR related lipid transfer domain containing 5
Aliases
GeneCards (Weizmann)STARD5
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr15:81312666-81324183 [Contig_View]  STARD5 [Vega]
TCGA cBioPortalSTARD5
AceView (NCBI)STARD5
Genatlas (Paris)STARD5
WikiGenes80765
SOURCE (Princeton)STARD5
Genetics Home Reference (NIH)STARD5
Genomic and cartography
GoldenPath hg38 (UCSC)STARD5  -     chr15:81312666-81324183 -  15q25.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)STARD5  -     15q25.1   [Description]    (hg19-Feb_2009)
EnsemblSTARD5 - 15q25.1 [CytoView hg19]  STARD5 - 15q25.1 [CytoView hg38]
Mapping of homologs : NCBISTARD5 [Mapview hg19]  STARD5 [Mapview hg38]
OMIM607050   
Gene and transcription
Genbank (Entrez)AF480304 AK026352 AK097024 AK225479 AL137657
RefSeq transcript (Entrez)NM_030574 NM_181900
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)STARD5
Cluster EST : UnigeneHs.513075 [ NCBI ]
CGAP (NCI)Hs.513075
Gene ExpressionSTARD5 [ NCBI-GEO ]   STARD5 [ EBI - ARRAY_EXPRESS ]   STARD5 [ SEEK ]   STARD5 [ MEM ]
Gene Expression Viewer (FireBrowse)STARD5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80765
GTEX Portal (Tissue expression)STARD5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NSY2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NSY2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NSY2
Splice isoforms : SwissVarQ9NSY2
PhosPhoSitePlusQ9NSY2
Domaine pattern : Prosite (Expaxy)START (PS50848)   
Domains : Interpro (EBI)StARD5    START-like_dom    START_lipid-bd_dom   
Domain families : Pfam (Sanger)START (PF01852)   
Domain families : Pfam (NCBI)pfam01852   
Domain families : Smart (EMBL)START (SM00234)  
Conserved Domain (NCBI)STARD5
DMDM Disease mutations80765
Blocks (Seattle)STARD5
PDB (SRS)2R55   
PDB (PDBSum)2R55   
PDB (IMB)2R55   
PDB (RSDB)2R55   
Structural Biology KnowledgeBase2R55   
SCOP (Structural Classification of Proteins)2R55   
CATH (Classification of proteins structures)2R55   
SuperfamilyQ9NSY2
Peptide AtlasQ9NSY2
HPRD09517
IPIIPI00164831   IPI00394786   
Protein Interaction databases
DIP (DOE-UCLA)Q9NSY2
IntAct (EBI)Q9NSY2
BioGRIDSTARD5
STRING (EMBL)STARD5
ZODIACSTARD5
Ontologies - Pathways
QuickGOQ9NSY2
Ontology : AmiGOmitochondrion  cytosol  cholesterol binding  bile acid and bile salt transport  cholesterol transporter activity  bile acid binding  cholesterol import  
Ontology : EGO-EBImitochondrion  cytosol  cholesterol binding  bile acid and bile salt transport  cholesterol transporter activity  bile acid binding  cholesterol import  
NDEx NetworkSTARD5
Atlas of Cancer Signalling NetworkSTARD5
Wikipedia pathwaysSTARD5
Orthology - Evolution
OrthoDB80765
Phylogenetic Trees/Animal Genes : TreeFamSTARD5
HOVERGENQ9NSY2
HOGENOMQ9NSY2
Homologs : HomoloGeneSTARD5
Homology/Alignments : Family Browser (UCSC)STARD5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSTARD5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)STARD5
dbVarSTARD5
ClinVarSTARD5
1000_GenomesSTARD5 
Exome Variant ServerSTARD5
ExAC (Exome Aggregation Consortium)STARD5 (select the gene name)
Genetic variants : HAPMAP80765
Genomic Variants (DGV)STARD5 [DGVbeta]
DECIPHERSTARD5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSTARD5 
Mutations
ICGC Data PortalSTARD5 
TCGA Data PortalSTARD5 
Broad Tumor PortalSTARD5
OASIS PortalSTARD5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSTARD5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSTARD5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch STARD5
DgiDB (Drug Gene Interaction Database)STARD5
DoCM (Curated mutations)STARD5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)STARD5 (select a term)
intoGenSTARD5
Cancer3DSTARD5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607050   
Orphanet
MedgenSTARD5
Genetic Testing Registry STARD5
NextProtQ9NSY2 [Medical]
TSGene80765
GENETestsSTARD5
Target ValidationSTARD5
Huge Navigator STARD5 [HugePedia]
snp3D : Map Gene to Disease80765
BioCentury BCIQSTARD5
ClinGenSTARD5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD80765
Chemical/Pharm GKB GenePA38286
Clinical trialSTARD5
Miscellaneous
canSAR (ICR)STARD5 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSTARD5
EVEXSTARD5
GoPubMedSTARD5
iHOPSTARD5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:40:37 CEST 2017

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