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STARD6 (StAR related lipid transfer domain containing 6)

Identity

Alias_namesSTART domain containing 6
Other alias-
HGNC (Hugo) STARD6
LocusID (NCBI) 147323
Atlas_Id 74297
Location 18q21.2  [Link to chromosome band 18q21]
Location_base_pair Starts at 54324692 and ends at 54354573 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)STARD6   18066
Cards
Entrez_Gene (NCBI)STARD6  147323  StAR related lipid transfer domain containing 6
Aliases
GeneCards (Weizmann)STARD6
Ensembl hg19 (Hinxton)ENSG00000174448 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000174448 [Gene_View]  chr18:54324692-54354573 [Contig_View]  STARD6 [Vega]
ICGC DataPortalENSG00000174448
TCGA cBioPortalSTARD6
AceView (NCBI)STARD6
Genatlas (Paris)STARD6
WikiGenes147323
SOURCE (Princeton)STARD6
Genetics Home Reference (NIH)STARD6
Genomic and cartography
GoldenPath hg38 (UCSC)STARD6  -     chr18:54324692-54354573 -  18q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)STARD6  -     18q21.2   [Description]    (hg19-Feb_2009)
EnsemblSTARD6 - 18q21.2 [CytoView hg19]  STARD6 - 18q21.2 [CytoView hg38]
Mapping of homologs : NCBISTARD6 [Mapview hg19]  STARD6 [Mapview hg38]
OMIM607051   
Gene and transcription
Genbank (Entrez)AF480305 BC140308 BC146468
RefSeq transcript (Entrez)NM_139171
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)STARD6
Cluster EST : UnigeneHs.438779 [ NCBI ]
CGAP (NCI)Hs.438779
Alternative Splicing GalleryENSG00000174448
Gene ExpressionSTARD6 [ NCBI-GEO ]   STARD6 [ EBI - ARRAY_EXPRESS ]   STARD6 [ SEEK ]   STARD6 [ MEM ]
Gene Expression Viewer (FireBrowse)STARD6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)147323
GTEX Portal (Tissue expression)STARD6
Protein : pattern, domain, 3D structure
UniProt/SwissProtP59095   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP59095  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP59095
Splice isoforms : SwissVarP59095
PhosPhoSitePlusP59095
Domaine pattern : Prosite (Expaxy)START (PS50848)   
Domains : Interpro (EBI)START-like_dom    START_lipid-bd_dom   
Domain families : Pfam (Sanger)START (PF01852)   
Domain families : Pfam (NCBI)pfam01852   
Domain families : Smart (EMBL)START (SM00234)  
Conserved Domain (NCBI)STARD6
DMDM Disease mutations147323
Blocks (Seattle)STARD6
PDB (SRS)2MOU   
PDB (PDBSum)2MOU   
PDB (IMB)2MOU   
PDB (RSDB)2MOU   
Structural Biology KnowledgeBase2MOU   
SCOP (Structural Classification of Proteins)2MOU   
CATH (Classification of proteins structures)2MOU   
SuperfamilyP59095
Human Protein AtlasENSG00000174448
Peptide AtlasP59095
HPRD09518
IPIIPI00171432   
Protein Interaction databases
DIP (DOE-UCLA)P59095
IntAct (EBI)P59095
FunCoupENSG00000174448
BioGRIDSTARD6
STRING (EMBL)STARD6
ZODIACSTARD6
Ontologies - Pathways
QuickGOP59095
Ontology : AmiGOmitochondrion  lipid transport  cholesterol binding  
Ontology : EGO-EBImitochondrion  lipid transport  cholesterol binding  
NDEx NetworkSTARD6
Atlas of Cancer Signalling NetworkSTARD6
Wikipedia pathwaysSTARD6
Orthology - Evolution
OrthoDB147323
GeneTree (enSembl)ENSG00000174448
Phylogenetic Trees/Animal Genes : TreeFamSTARD6
HOVERGENP59095
HOGENOMP59095
Homologs : HomoloGeneSTARD6
Homology/Alignments : Family Browser (UCSC)STARD6
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSTARD6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)STARD6
dbVarSTARD6
ClinVarSTARD6
1000_GenomesSTARD6 
Exome Variant ServerSTARD6
ExAC (Exome Aggregation Consortium)STARD6 (select the gene name)
Genetic variants : HAPMAP147323
Genomic Variants (DGV)STARD6 [DGVbeta]
DECIPHERSTARD6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSTARD6 
Mutations
ICGC Data PortalSTARD6 
TCGA Data PortalSTARD6 
Broad Tumor PortalSTARD6
OASIS PortalSTARD6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSTARD6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSTARD6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch STARD6
DgiDB (Drug Gene Interaction Database)STARD6
DoCM (Curated mutations)STARD6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)STARD6 (select a term)
intoGenSTARD6
Cancer3DSTARD6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607051   
Orphanet
MedgenSTARD6
Genetic Testing Registry STARD6
NextProtP59095 [Medical]
TSGene147323
GENETestsSTARD6
Target ValidationSTARD6
Huge Navigator STARD6 [HugePedia]
snp3D : Map Gene to Disease147323
BioCentury BCIQSTARD6
ClinGenSTARD6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD147323
Chemical/Pharm GKB GenePA38287
Clinical trialSTARD6
Miscellaneous
canSAR (ICR)STARD6 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSTARD6
EVEXSTARD6
GoPubMedSTARD6
iHOPSTARD6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:40:37 CEST 2017

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