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STARD7 (StAR related lipid transfer domain containing 7)

Identity

Alias_namesSTART domain containing 7
Alias_symbol (synonym)GTT1
Other alias
HGNC (Hugo) STARD7
LocusID (NCBI) 56910
Atlas_Id 56027
Location 2q11.2  [Link to chromosome band 2q11]
Location_base_pair Starts at 96850603 and ends at 96874573 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
MELK (9p13.2) / STARD7 (2q11.2)NFE2 (12q13.13) / STARD7 (2q11.2)STARD7 (2q11.2) / STARD7 (2q11.2)
STMN1 (1p36.11) / STARD7 (2q11.2)UNC50 (2q11.2) / STARD7 (2q11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)STARD7   18063
Cards
Entrez_Gene (NCBI)STARD7  56910  StAR related lipid transfer domain containing 7
AliasesGTT1
GeneCards (Weizmann)STARD7
Ensembl hg19 (Hinxton)ENSG00000084090 [Gene_View]  chr2:96850603-96874573 [Contig_View]  STARD7 [Vega]
Ensembl hg38 (Hinxton)ENSG00000084090 [Gene_View]  chr2:96850603-96874573 [Contig_View]  STARD7 [Vega]
ICGC DataPortalENSG00000084090
TCGA cBioPortalSTARD7
AceView (NCBI)STARD7
Genatlas (Paris)STARD7
WikiGenes56910
SOURCE (Princeton)STARD7
Genetics Home Reference (NIH)STARD7
Genomic and cartography
GoldenPath hg19 (UCSC)STARD7  -     chr2:96850603-96874573 -  2q11.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)STARD7  -     2q11.2   [Description]    (hg38-Dec_2013)
EnsemblSTARD7 - 2q11.2 [CytoView hg19]  STARD7 - 2q11.2 [CytoView hg38]
Mapping of homologs : NCBISTARD7 [Mapview hg19]  STARD7 [Mapview hg38]
OMIM616712   
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_020151 NM_139267
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)STARD7
Cluster EST : UnigeneHs.469331 [ NCBI ]
CGAP (NCI)Hs.469331
Alternative Splicing GalleryENSG00000084090
Gene ExpressionSTARD7 [ NCBI-GEO ]   STARD7 [ EBI - ARRAY_EXPRESS ]   STARD7 [ SEEK ]   STARD7 [ MEM ]
Gene Expression Viewer (FireBrowse)STARD7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56910
GTEX Portal (Tissue expression)STARD7
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NQZ5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NQZ5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NQZ5
Splice isoforms : SwissVarQ9NQZ5
PhosPhoSitePlusQ9NQZ5
Domaine pattern : Prosite (Expaxy)START (PS50848)   
Domains : Interpro (EBI)START-like_dom    START_lipid-bd_dom   
Domain families : Pfam (Sanger)START (PF01852)   
Domain families : Pfam (NCBI)pfam01852   
Domain families : Smart (EMBL)START (SM00234)  
Conserved Domain (NCBI)STARD7
DMDM Disease mutations56910
Blocks (Seattle)STARD7
SuperfamilyQ9NQZ5
Human Protein AtlasENSG00000084090
Peptide AtlasQ9NQZ5
HPRD18118
IPIIPI00853224   IPI00926266   
Protein Interaction databases
DIP (DOE-UCLA)Q9NQZ5
IntAct (EBI)Q9NQZ5
FunCoupENSG00000084090
BioGRIDSTARD7
STRING (EMBL)STARD7
ZODIACSTARD7
Ontologies - Pathways
QuickGOQ9NQZ5
Ontology : AmiGOtransporter activity  mitochondrion  lipid binding  phospholipid transport  positive regulation of protein targeting to mitochondrion  
Ontology : EGO-EBItransporter activity  mitochondrion  lipid binding  phospholipid transport  positive regulation of protein targeting to mitochondrion  
NDEx NetworkSTARD7
Atlas of Cancer Signalling NetworkSTARD7
Wikipedia pathwaysSTARD7
Orthology - Evolution
OrthoDB56910
GeneTree (enSembl)ENSG00000084090
Phylogenetic Trees/Animal Genes : TreeFamSTARD7
HOVERGENQ9NQZ5
HOGENOMQ9NQZ5
Homologs : HomoloGeneSTARD7
Homology/Alignments : Family Browser (UCSC)STARD7
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSTARD7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)STARD7
dbVarSTARD7
ClinVarSTARD7
1000_GenomesSTARD7 
Exome Variant ServerSTARD7
ExAC (Exome Aggregation Consortium)STARD7 (select the gene name)
Genetic variants : HAPMAP56910
Genomic Variants (DGV)STARD7 [DGVbeta]
DECIPHER (Syndromes)2:96850603-96874573  ENSG00000084090
CONAN: Copy Number AnalysisSTARD7 
Mutations
ICGC Data PortalSTARD7 
TCGA Data PortalSTARD7 
Broad Tumor PortalSTARD7
OASIS PortalSTARD7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSTARD7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSTARD7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch STARD7
DgiDB (Drug Gene Interaction Database)STARD7
DoCM (Curated mutations)STARD7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)STARD7 (select a term)
intoGenSTARD7
Cancer3DSTARD7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616712   
Orphanet
MedgenSTARD7
Genetic Testing Registry STARD7
NextProtQ9NQZ5 [Medical]
TSGene56910
GENETestsSTARD7
Huge Navigator STARD7 [HugePedia]
snp3D : Map Gene to Disease56910
BioCentury BCIQSTARD7
ClinGenSTARD7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56910
Chemical/Pharm GKB GenePA38285
Clinical trialSTARD7
Miscellaneous
canSAR (ICR)STARD7 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSTARD7
EVEXSTARD7
GoPubMedSTARD7
iHOPSTARD7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:29:34 CET 2017

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