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STARD9 (StAR related lipid transfer domain containing 9)

Identity

Other namesKIF16A
HGNC (Hugo) STARD9
LocusID (NCBI) 57519
Atlas_Id 52590
Location 15q15.2
Location_base_pair Starts at 42867857 and ends at 43013196 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
BRPF3 (6p21.31) / STARD9 (15q15.2)CHD2 (15q26.1) / STARD9 (15q15.2)KAT6B (10q22.2) / STARD9 (15q15.2)
RORA (15q22.2) / STARD9 (15q15.2)STARD9 (15q15.2) / LRRC8D (1p22.2)STARD9 (15q15.2) / SFTPB (2p11.2)
BRPF3 6p21.31 / STARD9 15q15.2RORA 15q22.2 / STARD9 15q15.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)STARD9   19162
Cards
Entrez_Gene (NCBI)STARD9  57519  StAR related lipid transfer domain containing 9
GeneCards (Weizmann)STARD9
Ensembl hg19 (Hinxton)ENSG00000159433 [Gene_View]  chr15:42867857-43013196 [Contig_View]  STARD9 [Vega]
Ensembl hg38 (Hinxton)ENSG00000159433 [Gene_View]  chr15:42867857-43013196 [Contig_View]  STARD9 [Vega]
ICGC DataPortalENSG00000159433
TCGA cBioPortalSTARD9
AceView (NCBI)STARD9
Genatlas (Paris)STARD9
WikiGenes57519
SOURCE (Princeton)STARD9
Genomic and cartography
GoldenPath hg19 (UCSC)STARD9  -     chr15:42867857-43013196 +  15q15.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)STARD9  -     15q15.2   [Description]    (hg38-Dec_2013)
EnsemblSTARD9 - 15q15.2 [CytoView hg19]  STARD9 - 15q15.2 [CytoView hg38]
Mapping of homologs : NCBISTARD9 [Mapview hg19]  STARD9 [Mapview hg38]
OMIM614642   
Gene and transcription
Genbank (Entrez)AB037721 AK025589 AK122666 AK297603 AL133579
RefSeq transcript (Entrez)NM_020759 NM_032381
RefSeq genomic (Entrez)NC_000015 NC_018926 NT_010194 NW_004929398
Consensus coding sequences : CCDS (NCBI)STARD9
Cluster EST : UnigeneHs.122061 [ NCBI ]
CGAP (NCI)Hs.122061
Alternative Splicing : Fast-db (Paris)GSHG0033850
Alternative Splicing GalleryENSG00000159433
Gene ExpressionSTARD9 [ NCBI-GEO ]   STARD9 [ EBI - ARRAY_EXPRESS ]   STARD9 [ SEEK ]   STARD9 [ MEM ]
Gene Expression Viewer (FireBrowse)STARD9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)57519
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9P2P6 (Uniprot)
NextProtQ9P2P6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9P2P6
Splice isoforms : SwissVarQ9P2P6 (Swissvar)
PhosPhoSitePlusQ9P2P6
Domaine pattern : Prosite (Expaxy)KINESIN_MOTOR_1 (PS00411)    KINESIN_MOTOR_2 (PS50067)    START (PS50848)   
Domains : Interpro (EBI)FHA_dom    Kinesin_motor_CS    Kinesin_motor_dom    P-loop_NTPase    SMAD_FHA_domain    START-like_dom    START_lipid-bd_dom   
Domain families : Pfam (Sanger)FHA (PF00498)    Kinesin (PF00225)    START (PF01852)   
Domain families : Pfam (NCBI)pfam00498    pfam00225    pfam01852   
Domain families : Smart (EMBL)FHA (SM00240)  KISc (SM00129)  
DMDM Disease mutations57519
Blocks (Seattle)STARD9
SuperfamilyQ9P2P6
Human Protein AtlasENSG00000159433
Peptide AtlasQ9P2P6
IPIIPI00784448   IPI00871757   IPI00954850   
Protein Interaction databases
DIP (DOE-UCLA)Q9P2P6
IntAct (EBI)Q9P2P6
FunCoupENSG00000159433
BioGRIDSTARD9
STRING (EMBL)STARD9
ZODIACSTARD9
Ontologies - Pathways
QuickGOQ9P2P6
Ontology : AmiGOmicrotubule motor activity  ATP binding  nucleus  nucleoplasm  cytoplasm  Golgi apparatus  centriole  kinesin complex  microtubule-based movement  microtubule binding  metabolic process  lipid binding  ATPase activity  cytoskeleton-dependent intracellular transport  spindle assembly  
Ontology : EGO-EBImicrotubule motor activity  ATP binding  nucleus  nucleoplasm  cytoplasm  Golgi apparatus  centriole  kinesin complex  microtubule-based movement  microtubule binding  metabolic process  lipid binding  ATPase activity  cytoskeleton-dependent intracellular transport  spindle assembly  
NDEx Network
Atlas of Cancer Signalling NetworkSTARD9
Wikipedia pathwaysSTARD9
Orthology - Evolution
OrthoDB57519
GeneTree (enSembl)ENSG00000159433
Phylogenetic Trees/Animal Genes : TreeFamSTARD9
Homologs : HomoloGeneSTARD9
Homology/Alignments : Family Browser (UCSC)STARD9
Gene fusions - Rearrangements
Fusion: TCGABRPF3 6p21.31 STARD9 15q15.2 GBM
Fusion: TCGARORA 15q22.2 STARD9 15q15.2 PRAD
Polymorphisms : SNP, variants
NCBI Variation ViewerSTARD9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)STARD9
dbVarSTARD9
ClinVarSTARD9
1000_GenomesSTARD9 
Exome Variant ServerSTARD9
ExAC (Exome Aggregation Consortium)STARD9 (select the gene name)
SNP (GeneSNP Utah)STARD9
SNP : HGBaseSTARD9
Genetic variants : HAPMAPSTARD9
Genomic Variants (DGV)STARD9 [DGVbeta]
Mutations
ICGC Data PortalSTARD9 
TCGA Data PortalSTARD9 
Broad Tumor PortalSTARD9
OASIS PortalSTARD9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSTARD9 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch STARD9
DgiDB (Drug Gene Interaction Database)STARD9
DoCM (Curated mutations)STARD9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)STARD9 (select a term)
intoGenSTARD9
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)15:42867857-43013196
CONAN: Copy Number AnalysisSTARD9 
Mutations and Diseases : HGMDSTARD9
OMIM614642   
MedgenSTARD9
Genetic Testing Registry STARD9
NextProtQ9P2P6 [Medical]
TSGene57519
GENETestsSTARD9
Huge Navigator STARD9 [HugePedia]  STARD9 [HugeCancerGEM]
snp3D : Map Gene to Disease57519
BioCentury BCIQSTARD9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57519
Chemical/Pharm GKB GenePA38805
Clinical trialSTARD9
Miscellaneous
canSAR (ICR)STARD9 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSTARD9
GoPubMedSTARD9
iHOPSTARD9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Apr 16 18:06:05 CEST 2016

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