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STARD9 (StAR-related lipid transfer (START) domain containing 9)

Identity

Other names-
HGNC (Hugo) STARD9
LocusID (NCBI) 57519
Location 15q15.2
Location_base_pair Starts at 42867857 and ends at 43013196 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

External links

Nomenclature
HGNC (Hugo)STARD9   19162
Cards
Entrez_Gene (NCBI)STARD9  57519  StAR-related lipid transfer (START) domain containing 9
GeneCards (Weizmann)STARD9
Ensembl hg19 (Hinxton)ENSG00000159433 [Gene_View]  chr15:42867857-43013196 [Contig_View]  STARD9 [Vega]
Ensembl hg38 (Hinxton)ENSG00000159433 [Gene_View]  chr15:42867857-43013196 [Contig_View]  STARD9 [Vega]
ICGC DataPortalENSG00000159433
cBioPortalSTARD9
AceView (NCBI)STARD9
Genatlas (Paris)STARD9
WikiGenes57519
SOURCE (Princeton)STARD9
Genomic and cartography
GoldenPath hg19 (UCSC)STARD9  -     chr15:42867857-43013196 +  15q15.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)STARD9  -     15q15.2   [Description]    (hg38-Dec_2013)
EnsemblSTARD9 - 15q15.2 [CytoView hg19]  STARD9 - 15q15.2 [CytoView hg38]
Mapping of homologs : NCBISTARD9 [Mapview hg19]  STARD9 [Mapview hg38]
OMIM614642   
Gene and transcription
Genbank (Entrez)AB037721 AK025589 AK122666 AK297603 AL133579
RefSeq transcript (Entrez)NM_020759 NM_032381
RefSeq genomic (Entrez)AC_000147 NC_000015 NC_018926 NT_010194 NW_001838214 NW_004929398
Consensus coding sequences : CCDS (NCBI)STARD9
Cluster EST : UnigeneHs.122061 [ NCBI ]
CGAP (NCI)Hs.122061
Alternative Splicing : Fast-db (Paris)GSHG0033850
Alternative Splicing GalleryENSG00000159433
Gene ExpressionSTARD9 [ NCBI-GEO ]     STARD9 [ SEEK ]   STARD9 [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9P2P6 (Uniprot)
NextProtQ9P2P6  [Medical]
With graphics : InterProQ9P2P6
Splice isoforms : SwissVarQ9P2P6 (Swissvar)
Domaine pattern : Prosite (Expaxy)KINESIN_MOTOR_1 (PS00411)    KINESIN_MOTOR_2 (PS50067)    START (PS50848)   
Domains : Interpro (EBI)FHA_dom    Kinesin-like_fam    Kinesin_motor_CS    Kinesin_motor_dom    P-loop_NTPase    SMAD_FHA_domain    START-like_dom    START_lipid-bd_dom   
Related proteins : CluSTrQ9P2P6
Domain families : Pfam (Sanger)FHA (PF00498)    Kinesin (PF00225)    START (PF01852)   
Domain families : Pfam (NCBI)pfam00498    pfam00225    pfam01852   
Domain families : Smart (EMBL)FHA (SM00240)  KISc (SM00129)  
DMDM Disease mutations57519
Blocks (Seattle)Q9P2P6
Human Protein AtlasENSG00000159433
Peptide AtlasQ9P2P6
IPIIPI00784448   IPI00871757   IPI00954850   
Protein Interaction databases
DIP (DOE-UCLA)Q9P2P6
IntAct (EBI)Q9P2P6
FunCoupENSG00000159433
BioGRIDSTARD9
IntegromeDBSTARD9
STRING (EMBL)STARD9
Ontologies - Pathways
QuickGOQ9P2P6
Ontology : AmiGOmicrotubule motor activity  ATP binding  nucleus  nucleolus  cytoplasm  Golgi apparatus  centriole  kinesin complex  microtubule-based movement  microtubule binding  metabolic process  lipid binding  spindle assembly  
Ontology : EGO-EBImicrotubule motor activity  ATP binding  nucleus  nucleolus  cytoplasm  Golgi apparatus  centriole  kinesin complex  microtubule-based movement  microtubule binding  metabolic process  lipid binding  spindle assembly  
Protein Interaction DatabaseSTARD9
DoCM (Curated mutations)STARD9
Wikipedia pathwaysSTARD9
Gene fusion - rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerSTARD9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)STARD9
dbVarSTARD9
ClinVarSTARD9
1000_GenomesSTARD9 
Exome Variant ServerSTARD9
SNP (GeneSNP Utah)STARD9
SNP : HGBaseSTARD9
Genetic variants : HAPMAPSTARD9
Genomic VariantsSTARD9  STARD9 [DGVbeta]
Mutations
ICGC Data PortalENSG00000159433 
Somatic Mutations in Cancer : COSMICSTARD9 
CONAN: Copy Number AnalysisSTARD9 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)15:42867857-43013196
Mutations and Diseases : HGMDSTARD9
OMIM614642   
MedgenSTARD9
NextProtQ9P2P6 [Medical]
GENETestsSTARD9
Disease Genetic AssociationSTARD9
Huge Navigator STARD9 [HugePedia]  STARD9 [HugeCancerGEM]
snp3D : Map Gene to Disease57519
DGIdb (Drug Gene Interaction db)STARD9
General knowledge
Homologs : HomoloGeneSTARD9
Homology/Alignments : Family Browser (UCSC)STARD9
Phylogenetic Trees/Animal Genes : TreeFamSTARD9
Chemical/Protein Interactions : CTD57519
Chemical/Pharm GKB GenePA38805
Clinical trialSTARD9
Cancer Resource (Charite)ENSG00000159433
Other databases
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
CoreMineSTARD9
GoPubMedSTARD9
iHOPSTARD9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2014Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sun Dec 21 01:45:48 CET 2014

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