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STATH (statherin)

Identity

Alias_symbol (synonym)STR
Other alias
HGNC (Hugo) STATH
LocusID (NCBI) 6779
Atlas_Id 55292
Location 4q13.3  [Link to chromosome band 4q13]
Location_base_pair Starts at 69995931 and ends at 70002456 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CKAP5 (11p11.2) / STATH (4q13.3)NAA50 (3q13.2) / STATH (4q13.3)STATH (4q13.3) / CHRM3 (1q43)
STATH (4q13.3) / CLDN10 (13q32.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)STATH   11369
Cards
Entrez_Gene (NCBI)STATH  6779  statherin
AliasesSTR
GeneCards (Weizmann)STATH
Ensembl hg19 (Hinxton)ENSG00000126549 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000126549 [Gene_View]  chr4:69995931-70002456 [Contig_View]  STATH [Vega]
ICGC DataPortalENSG00000126549
TCGA cBioPortalSTATH
AceView (NCBI)STATH
Genatlas (Paris)STATH
WikiGenes6779
SOURCE (Princeton)STATH
Genetics Home Reference (NIH)STATH
Genomic and cartography
GoldenPath hg38 (UCSC)STATH  -     chr4:69995931-70002456 +  4q13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)STATH  -     4q13.3   [Description]    (hg19-Feb_2009)
EnsemblSTATH - 4q13.3 [CytoView hg19]  STATH - 4q13.3 [CytoView hg38]
Mapping of homologs : NCBISTATH [Mapview hg19]  STATH [Mapview hg38]
OMIM184470   
Gene and transcription
Genbank (Entrez)AK311812 BC067219 BX649104 CB958641 CB986973
RefSeq transcript (Entrez)NM_001009181 NM_003154
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)STATH
Cluster EST : UnigeneHs.654495 [ NCBI ]
CGAP (NCI)Hs.654495
Alternative Splicing GalleryENSG00000126549
Gene ExpressionSTATH [ NCBI-GEO ]   STATH [ EBI - ARRAY_EXPRESS ]   STATH [ SEEK ]   STATH [ MEM ]
Gene Expression Viewer (FireBrowse)STATH [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6779
GTEX Portal (Tissue expression)STATH
Protein : pattern, domain, 3D structure
UniProt/SwissProtP02808   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP02808  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP02808
Splice isoforms : SwissVarP02808
PhosPhoSitePlusP02808
Domains : Interpro (EBI)Histatin/statherin    Statherin   
Domain families : Pfam (Sanger)Statherin (PF03875)   
Domain families : Pfam (NCBI)pfam03875   
Conserved Domain (NCBI)STATH
DMDM Disease mutations6779
Blocks (Seattle)STATH
SuperfamilyP02808
Human Protein AtlasENSG00000126549
Peptide AtlasP02808
HPRD01696
IPIIPI00022990   IPI00550456   
Protein Interaction databases
DIP (DOE-UCLA)P02808
IntAct (EBI)P02808
FunCoupENSG00000126549
BioGRIDSTATH
STRING (EMBL)STATH
ZODIACSTATH
Ontologies - Pathways
QuickGOP02808
Ontology : AmiGOossification  protein binding  extracellular region  extracellular matrix constituent, lubricant activity  structural constituent of tooth enamel  negative regulation of bone mineralization  biomineral tissue development  defense response to bacterium  saliva secretion  hydroxyapatite binding  
Ontology : EGO-EBIossification  protein binding  extracellular region  extracellular matrix constituent, lubricant activity  structural constituent of tooth enamel  negative regulation of bone mineralization  biomineral tissue development  defense response to bacterium  saliva secretion  hydroxyapatite binding  
Pathways : KEGGSalivary secretion   
NDEx NetworkSTATH
Atlas of Cancer Signalling NetworkSTATH
Wikipedia pathwaysSTATH
Orthology - Evolution
OrthoDB6779
GeneTree (enSembl)ENSG00000126549
Phylogenetic Trees/Animal Genes : TreeFamSTATH
HOVERGENP02808
HOGENOMP02808
Homologs : HomoloGeneSTATH
Homology/Alignments : Family Browser (UCSC)STATH
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSTATH [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)STATH
dbVarSTATH
ClinVarSTATH
1000_GenomesSTATH 
Exome Variant ServerSTATH
ExAC (Exome Aggregation Consortium)STATH (select the gene name)
Genetic variants : HAPMAP6779
Genomic Variants (DGV)STATH [DGVbeta]
DECIPHERSTATH [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSTATH 
Mutations
ICGC Data PortalSTATH 
TCGA Data PortalSTATH 
Broad Tumor PortalSTATH
OASIS PortalSTATH [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSTATH  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSTATH
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch STATH
DgiDB (Drug Gene Interaction Database)STATH
DoCM (Curated mutations)STATH (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)STATH (select a term)
intoGenSTATH
Cancer3DSTATH(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM184470   
Orphanet
MedgenSTATH
Genetic Testing Registry STATH
NextProtP02808 [Medical]
TSGene6779
GENETestsSTATH
Huge Navigator STATH [HugePedia]
snp3D : Map Gene to Disease6779
BioCentury BCIQSTATH
ClinGenSTATH
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6779
Chemical/Pharm GKB GenePA36187
Clinical trialSTATH
Miscellaneous
canSAR (ICR)STATH (select the gene name)
Probes
Litterature
PubMed31 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSTATH
EVEXSTATH
GoPubMedSTATH
iHOPSTATH
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:39:31 CEST 2017

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