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STAU1 (staufen double-stranded RNA binding protein 1)

Identity

Alias_namesregulatory subunit 150
STAU
Alias_symbol (synonym)PPP1R150
Other alias
HGNC (Hugo) STAU1
LocusID (NCBI) 6780
Atlas_Id 46907
Location 20q13.13  [Link to chromosome band 20q13]
Location_base_pair Starts at 49113339 and ends at 49188370 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
BTF3 (5q13.2) / STAU1 (20q13.13)LOC100507412 (-) / STAU1 (20q13.13)STAU1 (20q13.13) / CALM1 (14q32.11)
STAU1 (20q13.13) / MRPL4 (19p13.2)STAU1 (20q13.13) / PREX1 (20q13.13)STAU1 (20q13.13) / STAU1 (20q13.13)
STAU1 20q13.13 / MRPL4 19p13.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)STAU1   11370
Cards
Entrez_Gene (NCBI)STAU1  6780  staufen double-stranded RNA binding protein 1
AliasesPPP1R150; STAU
GeneCards (Weizmann)STAU1
Ensembl hg19 (Hinxton)ENSG00000124214 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000124214 [Gene_View]  chr20:49113339-49188370 [Contig_View]  STAU1 [Vega]
ICGC DataPortalENSG00000124214
TCGA cBioPortalSTAU1
AceView (NCBI)STAU1
Genatlas (Paris)STAU1
WikiGenes6780
SOURCE (Princeton)STAU1
Genetics Home Reference (NIH)STAU1
Genomic and cartography
GoldenPath hg38 (UCSC)STAU1  -     chr20:49113339-49188370 -  20q13.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)STAU1  -     20q13.13   [Description]    (hg19-Feb_2009)
EnsemblSTAU1 - 20q13.13 [CytoView hg19]  STAU1 - 20q13.13 [CytoView hg38]
Mapping of homologs : NCBISTAU1 [Mapview hg19]  STAU1 [Mapview hg38]
OMIM601716   
Gene and transcription
Genbank (Entrez)###############################################################################################################################################################################################################################################################
RefSeq transcript (Entrez)NM_001037328 NM_001319134 NM_001319135 NM_001322927 NM_001322928 NM_001322929 NM_001322930 NM_001322931 NM_001322932 NM_001322933 NM_004602 NM_017452 NM_017453 NM_017454
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)STAU1
Cluster EST : UnigeneHs.596704 [ NCBI ]
CGAP (NCI)Hs.596704
Alternative Splicing GalleryENSG00000124214
Gene ExpressionSTAU1 [ NCBI-GEO ]   STAU1 [ EBI - ARRAY_EXPRESS ]   STAU1 [ SEEK ]   STAU1 [ MEM ]
Gene Expression Viewer (FireBrowse)STAU1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6780
GTEX Portal (Tissue expression)STAU1
Protein : pattern, domain, 3D structure
UniProt/SwissProtO95793   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO95793  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO95793
Splice isoforms : SwissVarO95793
PhosPhoSitePlusO95793
Domaine pattern : Prosite (Expaxy)DS_RBD (PS50137)   
Domains : Interpro (EBI)dsRBD_dom    Staufen_C   
Domain families : Pfam (Sanger)dsrm (PF00035)    Staufen_C (PF16482)   
Domain families : Pfam (NCBI)pfam00035    pfam16482   
Domain families : Smart (EMBL)DSRM (SM00358)  
Conserved Domain (NCBI)STAU1
DMDM Disease mutations6780
Blocks (Seattle)STAU1
PDB (SRS)4DKK   
PDB (PDBSum)4DKK   
PDB (IMB)4DKK   
PDB (RSDB)4DKK   
Structural Biology KnowledgeBase4DKK   
SCOP (Structural Classification of Proteins)4DKK   
CATH (Classification of proteins structures)4DKK   
SuperfamilyO95793
Human Protein AtlasENSG00000124214
Peptide AtlasO95793
HPRD03422
IPIIPI00000001   IPI00218609   IPI00645009   IPI00643664   IPI00641873   IPI00553038   
Protein Interaction databases
DIP (DOE-UCLA)O95793
IntAct (EBI)O95793
FunCoupENSG00000124214
BioGRIDSTAU1
STRING (EMBL)STAU1
ZODIACSTAU1
Ontologies - Pathways
QuickGOO95793
Ontology : AmiGORNA binding  double-stranded RNA binding  protein binding  cytoplasm  endoplasmic reticulum  rough endoplasmic reticulum  cytosol  microtubule associated complex  plasma membrane  protein phosphatase 1 binding  cytoplasmic stress granule  membrane  dendrite  cellular response to oxidative stress  cytoplasmic ribonucleoprotein granule  neuronal cell body  cell body  positive regulation of viral genome replication  positive regulation by virus of viral protein levels in host cell  extracellular exosome  positive regulation of long-term synaptic potentiation  
Ontology : EGO-EBIRNA binding  double-stranded RNA binding  protein binding  cytoplasm  endoplasmic reticulum  rough endoplasmic reticulum  cytosol  microtubule associated complex  plasma membrane  protein phosphatase 1 binding  cytoplasmic stress granule  membrane  dendrite  cellular response to oxidative stress  cytoplasmic ribonucleoprotein granule  neuronal cell body  cell body  positive regulation of viral genome replication  positive regulation by virus of viral protein levels in host cell  extracellular exosome  positive regulation of long-term synaptic potentiation  
NDEx NetworkSTAU1
Atlas of Cancer Signalling NetworkSTAU1
Wikipedia pathwaysSTAU1
Orthology - Evolution
OrthoDB6780
GeneTree (enSembl)ENSG00000124214
Phylogenetic Trees/Animal Genes : TreeFamSTAU1
HOVERGENO95793
HOGENOMO95793
Homologs : HomoloGeneSTAU1
Homology/Alignments : Family Browser (UCSC)STAU1
Gene fusions - Rearrangements
Fusion : MitelmanSTAU1/MRPL4 [20q13.13/19p13.2]  
Fusion: TCGASTAU1 20q13.13 MRPL4 19p13.2 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSTAU1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)STAU1
dbVarSTAU1
ClinVarSTAU1
1000_GenomesSTAU1 
Exome Variant ServerSTAU1
ExAC (Exome Aggregation Consortium)STAU1 (select the gene name)
Genetic variants : HAPMAP6780
Genomic Variants (DGV)STAU1 [DGVbeta]
DECIPHERSTAU1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSTAU1 
Mutations
ICGC Data PortalSTAU1 
TCGA Data PortalSTAU1 
Broad Tumor PortalSTAU1
OASIS PortalSTAU1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSTAU1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSTAU1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch STAU1
DgiDB (Drug Gene Interaction Database)STAU1
DoCM (Curated mutations)STAU1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)STAU1 (select a term)
intoGenSTAU1
Cancer3DSTAU1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM601716   
Orphanet
MedgenSTAU1
Genetic Testing Registry STAU1
NextProtO95793 [Medical]
TSGene6780
GENETestsSTAU1
Target ValidationSTAU1
Huge Navigator STAU1 [HugePedia]
snp3D : Map Gene to Disease6780
BioCentury BCIQSTAU1
ClinGenSTAU1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6780
Chemical/Pharm GKB GenePA36188
Clinical trialSTAU1
Miscellaneous
canSAR (ICR)STAU1 (select the gene name)
Probes
Litterature
PubMed100 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSTAU1
EVEXSTAU1
GoPubMedSTAU1
iHOPSTAU1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 12:57:51 CEST 2017

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