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STAU1 (staufen double-stranded RNA binding protein 1)

Identity

Alias (NCBI)PPP1R150
STAU
HGNC (Hugo) STAU1
HGNC Alias symbPPP1R150
HGNC Alias nameprotein phosphatase 1, regulatory subunit 150
HGNC Previous nameSTAU
HGNC Previous namestaufen (Drosophila, RNA-binding protein)
 staufen, RNA binding protein (Drosophila)
 staufen, RNA binding protein, homolog 1 (Drosophila)
LocusID (NCBI) 6780
Atlas_Id 46907
Location 20q13.13  [Link to chromosome band 20q13]
Location_base_pair Starts at 49113339 and ends at 49188370 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
BTF3 (5q13.2) / STAU1 (20q13.13)LOC100507412 (-) / STAU1 (20q13.13)STAU1 (20q13.13) / CALM1 (14q32.11)
STAU1 (20q13.13) / MRPL4 (19p13.2)STAU1 (20q13.13) / PREX1 (20q13.13)STAU1 (20q13.13) / STAU1 (20q13.13)
STAU1 20q13.13 / MRPL4 19p13.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)STAU1   11370
Cards
Entrez_Gene (NCBI)STAU1    staufen double-stranded RNA binding protein 1
AliasesPPP1R150; STAU
GeneCards (Weizmann)STAU1
Ensembl hg19 (Hinxton)ENSG00000124214 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000124214 [Gene_View]  ENSG00000124214 [Sequence]  chr20:49113339-49188370 [Contig_View]  STAU1 [Vega]
ICGC DataPortalENSG00000124214
TCGA cBioPortalSTAU1
AceView (NCBI)STAU1
Genatlas (Paris)STAU1
SOURCE (Princeton)STAU1
Genetics Home Reference (NIH)STAU1
Genomic and cartography
GoldenPath hg38 (UCSC)STAU1  -     chr20:49113339-49188370 -  20q13.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)STAU1  -     20q13.13   [Description]    (hg19-Feb_2009)
GoldenPathSTAU1 - 20q13.13 [CytoView hg19]  STAU1 - 20q13.13 [CytoView hg38]
ImmunoBaseENSG00000124214
Genome Data Viewer NCBISTAU1 [Mapview hg19]  
OMIM601716   
Gene and transcription
Genbank (Entrez)AB209561 AF061938 AF061939 AF061940 AF061941
RefSeq transcript (Entrez)NM_001037328 NM_001319134 NM_001319135 NM_001322927 NM_001322928 NM_001322929 NM_001322930 NM_001322931 NM_001322932 NM_001322933 NM_004602 NM_017452 NM_017453 NM_017454
Consensus coding sequences : CCDS (NCBI)STAU1
Gene ExpressionSTAU1 [ NCBI-GEO ]   STAU1 [ EBI - ARRAY_EXPRESS ]   STAU1 [ SEEK ]   STAU1 [ MEM ]
Gene Expression Viewer (FireBrowse)STAU1 [ Firebrowse - Broad ]
GenevisibleExpression of STAU1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6780
GTEX Portal (Tissue expression)STAU1
Human Protein AtlasENSG00000124214-STAU1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO95793   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO95793  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO95793
PhosPhoSitePlusO95793
Domaine pattern : Prosite (Expaxy)DS_RBD (PS50137)   
Domains : Interpro (EBI)dsRBD_dom    Staufen_C   
Domain families : Pfam (Sanger)dsrm (PF00035)    Staufen_C (PF16482)   
Domain families : Pfam (NCBI)pfam00035    pfam16482   
Domain families : Smart (EMBL)DSRM (SM00358)  
Conserved Domain (NCBI)STAU1
PDB (RSDB)4DKK    6HTU    6SDW    6SDY   
PDB Europe4DKK    6HTU    6SDW    6SDY   
PDB (PDBSum)4DKK    6HTU    6SDW    6SDY   
PDB (IMB)4DKK    6HTU    6SDW    6SDY   
Structural Biology KnowledgeBase4DKK    6HTU    6SDW    6SDY   
SCOP (Structural Classification of Proteins)4DKK    6HTU    6SDW    6SDY   
CATH (Classification of proteins structures)4DKK    6HTU    6SDW    6SDY   
SuperfamilyO95793
AlphaFold pdb e-kbO95793   
Human Protein Atlas [tissue]ENSG00000124214-STAU1 [tissue]
HPRD03422
Protein Interaction databases
DIP (DOE-UCLA)O95793
IntAct (EBI)O95793
BioGRIDSTAU1
STRING (EMBL)STAU1
ZODIACSTAU1
Ontologies - Pathways
QuickGOO95793
Ontology : AmiGORNA binding  double-stranded RNA binding  protein binding  cytoplasm  endoplasmic reticulum  rough endoplasmic reticulum  cytosol  microtubule associated complex  plasma membrane  protein phosphatase 1 binding  cytoplasmic stress granule  membrane  dendrite  cellular response to oxidative stress  cytoplasmic ribonucleoprotein granule  neuronal cell body  cell body  positive regulation of viral genome replication  positive regulation by virus of viral protein levels in host cell  extracellular exosome  glutamatergic synapse  modification of postsynaptic structure  positive regulation of long-term synaptic potentiation  
Ontology : EGO-EBIRNA binding  double-stranded RNA binding  protein binding  cytoplasm  endoplasmic reticulum  rough endoplasmic reticulum  cytosol  microtubule associated complex  plasma membrane  protein phosphatase 1 binding  cytoplasmic stress granule  membrane  dendrite  cellular response to oxidative stress  cytoplasmic ribonucleoprotein granule  neuronal cell body  cell body  positive regulation of viral genome replication  positive regulation by virus of viral protein levels in host cell  extracellular exosome  glutamatergic synapse  modification of postsynaptic structure  positive regulation of long-term synaptic potentiation  
NDEx NetworkSTAU1
Atlas of Cancer Signalling NetworkSTAU1
Wikipedia pathwaysSTAU1
Orthology - Evolution
OrthoDB6780
GeneTree (enSembl)ENSG00000124214
Phylogenetic Trees/Animal Genes : TreeFamSTAU1
Homologs : HomoloGeneSTAU1
Homology/Alignments : Family Browser (UCSC)STAU1
Gene fusions - Rearrangements
Fusion : MitelmanSTAU1/MRPL4 [20q13.13/19p13.2]  
Fusion : QuiverSTAU1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSTAU1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)STAU1
dbVarSTAU1
ClinVarSTAU1
MonarchSTAU1
1000_GenomesSTAU1 
Exome Variant ServerSTAU1
GNOMAD BrowserENSG00000124214
Varsome BrowserSTAU1
ACMGSTAU1 variants
VarityO95793
Genomic Variants (DGV)STAU1 [DGVbeta]
DECIPHERSTAU1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSTAU1 
Mutations
ICGC Data PortalSTAU1 
TCGA Data PortalSTAU1 
Broad Tumor PortalSTAU1
OASIS PortalSTAU1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSTAU1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSTAU1
Mutations and Diseases : HGMDSTAU1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaSTAU1
DgiDB (Drug Gene Interaction Database)STAU1
DoCM (Curated mutations)STAU1
CIViC (Clinical Interpretations of Variants in Cancer)STAU1
Cancer3DSTAU1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM601716   
Orphanet
DisGeNETSTAU1
MedgenSTAU1
Genetic Testing Registry STAU1
NextProtO95793 [Medical]
GENETestsSTAU1
Target ValidationSTAU1
Huge Navigator STAU1 [HugePedia]
ClinGenSTAU1
Clinical trials, drugs, therapy
MyCancerGenomeSTAU1
Protein Interactions : CTDSTAU1
Pharm GKB GenePA36188
PharosO95793
Clinical trialSTAU1
Miscellaneous
canSAR (ICR)STAU1
HarmonizomeSTAU1
DataMed IndexSTAU1
Probes
Litterature
PubMed170 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSTAU1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 15:33:33 CEST 2021

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