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STAU2 (staufen double-stranded RNA binding protein 2)

Identity

Alias_namesstaufen (Drosophila, RNA-binding protein) homolog 2
staufen, RNA binding protein, homolog 2 (Drosophila)
Alias_symbol (synonym)39K2
Other alias39K3
HGNC (Hugo) STAU2
LocusID (NCBI) 27067
Atlas_Id 78524
Location 8q21.11  [Link to chromosome band 8q21]
Location_base_pair Starts at 73420369 and ends at 73746927 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
RNF19A (8q22.2) / STAU2 (8q21.11)SCARB2 (4q21.1) / STAU2 (8q21.11)STAU2 (8q21.11) / DEK (6p22.3)
STAU2 (8q21.11) / MSI2 (17q22)STAU2 (8q21.11) / RP11-240B13.2 ()STAU2 (8q21.11) / STAU2 (8q21.11)
TP53BP1 (15q15.3) / STAU2 (8q21.11)TPD52 (8q21.13) / STAU2 (8q21.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)STAU2   11371
Cards
Entrez_Gene (NCBI)STAU2  27067  staufen double-stranded RNA binding protein 2
Aliases39K2; 39K3
GeneCards (Weizmann)STAU2
Ensembl hg19 (Hinxton)ENSG00000040341 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000040341 [Gene_View]  chr8:73420369-73746927 [Contig_View]  STAU2 [Vega]
ICGC DataPortalENSG00000040341
TCGA cBioPortalSTAU2
AceView (NCBI)STAU2
Genatlas (Paris)STAU2
WikiGenes27067
SOURCE (Princeton)STAU2
Genetics Home Reference (NIH)STAU2
Genomic and cartography
GoldenPath hg38 (UCSC)STAU2  -     chr8:73420369-73746927 -  8q21.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)STAU2  -     8q21.11   [Description]    (hg19-Feb_2009)
EnsemblSTAU2 - 8q21.11 [CytoView hg19]  STAU2 - 8q21.11 [CytoView hg38]
Mapping of homologs : NCBISTAU2 [Mapview hg19]  STAU2 [Mapview hg38]
OMIM605920   
Gene and transcription
Genbank (Entrez)AB210014 AF459097 AF459098 AK001576 AK002152
RefSeq transcript (Entrez)NM_001164380 NM_001164381 NM_001164382 NM_001164383 NM_001164384 NM_001164385 NM_014393
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)STAU2
Cluster EST : UnigeneHs.561815 [ NCBI ]
CGAP (NCI)Hs.561815
Alternative Splicing GalleryENSG00000040341
Gene ExpressionSTAU2 [ NCBI-GEO ]   STAU2 [ EBI - ARRAY_EXPRESS ]   STAU2 [ SEEK ]   STAU2 [ MEM ]
Gene Expression Viewer (FireBrowse)STAU2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)27067
GTEX Portal (Tissue expression)STAU2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NUL3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NUL3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NUL3
Splice isoforms : SwissVarQ9NUL3
PhosPhoSitePlusQ9NUL3
Domaine pattern : Prosite (Expaxy)DS_RBD (PS50137)   
Domains : Interpro (EBI)dsRBD_dom    Staufen_C   
Domain families : Pfam (Sanger)dsrm (PF00035)    Staufen_C (PF16482)   
Domain families : Pfam (NCBI)pfam00035    pfam16482   
Domain families : Smart (EMBL)DSRM (SM00358)  
Conserved Domain (NCBI)STAU2
DMDM Disease mutations27067
Blocks (Seattle)STAU2
SuperfamilyQ9NUL3
Human Protein AtlasENSG00000040341
Peptide AtlasQ9NUL3
HPRD09328
IPIIPI00300789   IPI00164481   IPI01009624   IPI00644696   IPI01009003   IPI00943936   IPI00644299   IPI00943844   IPI01013767   IPI00973515   IPI00978419   IPI00976647   IPI00982554   IPI00974583   IPI00980246   IPI00978201   IPI01013930   
Protein Interaction databases
DIP (DOE-UCLA)Q9NUL3
IntAct (EBI)Q9NUL3
FunCoupENSG00000040341
BioGRIDSTAU2
STRING (EMBL)STAU2
ZODIACSTAU2
Ontologies - Pathways
QuickGOQ9NUL3
Ontology : AmiGORNA binding  double-stranded RNA binding  protein binding  nucleolus  endoplasmic reticulum  microtubule  transport  membrane  
Ontology : EGO-EBIRNA binding  double-stranded RNA binding  protein binding  nucleolus  endoplasmic reticulum  microtubule  transport  membrane  
NDEx NetworkSTAU2
Atlas of Cancer Signalling NetworkSTAU2
Wikipedia pathwaysSTAU2
Orthology - Evolution
OrthoDB27067
GeneTree (enSembl)ENSG00000040341
Phylogenetic Trees/Animal Genes : TreeFamSTAU2
HOVERGENQ9NUL3
HOGENOMQ9NUL3
Homologs : HomoloGeneSTAU2
Homology/Alignments : Family Browser (UCSC)STAU2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSTAU2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)STAU2
dbVarSTAU2
ClinVarSTAU2
1000_GenomesSTAU2 
Exome Variant ServerSTAU2
ExAC (Exome Aggregation Consortium)STAU2 (select the gene name)
Genetic variants : HAPMAP27067
Genomic Variants (DGV)STAU2 [DGVbeta]
DECIPHERSTAU2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSTAU2 
Mutations
ICGC Data PortalSTAU2 
TCGA Data PortalSTAU2 
Broad Tumor PortalSTAU2
OASIS PortalSTAU2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSTAU2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSTAU2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch STAU2
DgiDB (Drug Gene Interaction Database)STAU2
DoCM (Curated mutations)STAU2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)STAU2 (select a term)
intoGenSTAU2
Cancer3DSTAU2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605920   
Orphanet
MedgenSTAU2
Genetic Testing Registry STAU2
NextProtQ9NUL3 [Medical]
TSGene27067
GENETestsSTAU2
Target ValidationSTAU2
Huge Navigator STAU2 [HugePedia]
snp3D : Map Gene to Disease27067
BioCentury BCIQSTAU2
ClinGenSTAU2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD27067
Chemical/Pharm GKB GenePA36189
Clinical trialSTAU2
Miscellaneous
canSAR (ICR)STAU2 (select the gene name)
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSTAU2
EVEXSTAU2
GoPubMedSTAU2
iHOPSTAU2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:40:37 CEST 2017

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