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STBD1 (starch binding domain 1)

Identity

Alias_symbol (synonym)FLJ41801
GENX-3414
Other aliasGENEX3414
HGNC (Hugo) STBD1
LocusID (NCBI) 8987
Atlas_Id 74303
Location 4q21.1  [Link to chromosome band 4q21]
Location_base_pair Starts at 77227179 and ends at 77232283 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
HDDC2 (6q22.31) / STBD1 (4q21.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)STBD1   24854
Cards
Entrez_Gene (NCBI)STBD1  8987  starch binding domain 1
AliasesGENEX3414; GENX-3414
GeneCards (Weizmann)STBD1
Ensembl hg19 (Hinxton)ENSG00000118804 [Gene_View]  chr4:77227179-77232283 [Contig_View]  STBD1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000118804 [Gene_View]  chr4:77227179-77232283 [Contig_View]  STBD1 [Vega]
ICGC DataPortalENSG00000118804
TCGA cBioPortalSTBD1
AceView (NCBI)STBD1
Genatlas (Paris)STBD1
WikiGenes8987
SOURCE (Princeton)STBD1
Genetics Home Reference (NIH)STBD1
Genomic and cartography
GoldenPath hg19 (UCSC)STBD1  -     chr4:77227179-77232283 +  4q21.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)STBD1  -     4q21.1   [Description]    (hg38-Dec_2013)
EnsemblSTBD1 - 4q21.1 [CytoView hg19]  STBD1 - 4q21.1 [CytoView hg38]
Mapping of homologs : NCBISTBD1 [Mapview hg19]  STBD1 [Mapview hg38]
OMIM607406   
Gene and transcription
Genbank (Entrez)AF062534 AK002155 AK074635 AK123795 BC022301
RefSeq transcript (Entrez)NM_003943
RefSeq genomic (Entrez)NC_000004 NC_018915 NT_016354 NW_004929320
Consensus coding sequences : CCDS (NCBI)STBD1
Cluster EST : UnigeneHs.109590 [ NCBI ]
CGAP (NCI)Hs.109590
Alternative Splicing GalleryENSG00000118804
Gene ExpressionSTBD1 [ NCBI-GEO ]   STBD1 [ EBI - ARRAY_EXPRESS ]   STBD1 [ SEEK ]   STBD1 [ MEM ]
Gene Expression Viewer (FireBrowse)STBD1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8987
GTEX Portal (Tissue expression)STBD1
Protein : pattern, domain, 3D structure
UniProt/SwissProtO95210   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO95210  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO95210
Splice isoforms : SwissVarO95210
PhosPhoSitePlusO95210
Domaine pattern : Prosite (Expaxy)CBM20 (PS51166)   
Domains : Interpro (EBI)Carb-bd-like_fold    CBM_fam20    Ig-like_fold   
Domain families : Pfam (Sanger)CBM_20 (PF00686)   
Domain families : Pfam (NCBI)pfam00686   
Domain families : Smart (EMBL)CBM_2 (SM01065)  
Conserved Domain (NCBI)STBD1
DMDM Disease mutations8987
Blocks (Seattle)STBD1
SuperfamilyO95210
Human Protein AtlasENSG00000118804
Peptide AtlasO95210
HPRD08460
IPIIPI00022538   IPI01014075   
Protein Interaction databases
DIP (DOE-UCLA)O95210
IntAct (EBI)O95210
FunCoupENSG00000118804
BioGRIDSTBD1
STRING (EMBL)STBD1
ZODIACSTBD1
Ontologies - Pathways
QuickGOO95210
Ontology : AmiGOprotein binding  integral component of plasma membrane  muscle contraction  membrane  starch binding  
Ontology : EGO-EBIprotein binding  integral component of plasma membrane  muscle contraction  membrane  starch binding  
NDEx NetworkSTBD1
Atlas of Cancer Signalling NetworkSTBD1
Wikipedia pathwaysSTBD1
Orthology - Evolution
OrthoDB8987
GeneTree (enSembl)ENSG00000118804
Phylogenetic Trees/Animal Genes : TreeFamSTBD1
HOVERGENO95210
HOGENOMO95210
Homologs : HomoloGeneSTBD1
Homology/Alignments : Family Browser (UCSC)STBD1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSTBD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)STBD1
dbVarSTBD1
ClinVarSTBD1
1000_GenomesSTBD1 
Exome Variant ServerSTBD1
ExAC (Exome Aggregation Consortium)STBD1 (select the gene name)
Genetic variants : HAPMAP8987
Genomic Variants (DGV)STBD1 [DGVbeta]
DECIPHER (Syndromes)4:77227179-77232283  ENSG00000118804
CONAN: Copy Number AnalysisSTBD1 
Mutations
ICGC Data PortalSTBD1 
TCGA Data PortalSTBD1 
Broad Tumor PortalSTBD1
OASIS PortalSTBD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSTBD1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSTBD1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch STBD1
DgiDB (Drug Gene Interaction Database)STBD1
DoCM (Curated mutations)STBD1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)STBD1 (select a term)
intoGenSTBD1
Cancer3DSTBD1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607406   
Orphanet
MedgenSTBD1
Genetic Testing Registry STBD1
NextProtO95210 [Medical]
TSGene8987
GENETestsSTBD1
Huge Navigator STBD1 [HugePedia]
snp3D : Map Gene to Disease8987
BioCentury BCIQSTBD1
ClinGenSTBD1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8987
Chemical/Pharm GKB GenePA162405002
Clinical trialSTBD1
Miscellaneous
canSAR (ICR)STBD1 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSTBD1
EVEXSTBD1
GoPubMedSTBD1
iHOPSTBD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:46:54 CET 2017

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