Atlas of Genetics and Cytogenetics in Oncology and Haematology


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STC1 (stanniocalcin 1)

Identity

Alias_namesSTC
Other alias
HGNC (Hugo) STC1
LocusID (NCBI) 6781
Atlas_Id 46263
Location 8p21.2  [Link to chromosome band 8p21]
Location_base_pair Starts at 23841921 and ends at 23854807 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
PRRC2B (9q34.13) / STC1 (8p21.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)STC1   11373
Cards
Entrez_Gene (NCBI)STC1  6781  stanniocalcin 1
AliasesSTC
GeneCards (Weizmann)STC1
Ensembl hg19 (Hinxton)ENSG00000159167 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000159167 [Gene_View]  chr8:23841921-23854807 [Contig_View]  STC1 [Vega]
ICGC DataPortalENSG00000159167
TCGA cBioPortalSTC1
AceView (NCBI)STC1
Genatlas (Paris)STC1
WikiGenes6781
SOURCE (Princeton)STC1
Genetics Home Reference (NIH)STC1
Genomic and cartography
GoldenPath hg38 (UCSC)STC1  -     chr8:23841921-23854807 -  8p21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)STC1  -     8p21.2   [Description]    (hg19-Feb_2009)
EnsemblSTC1 - 8p21.2 [CytoView hg19]  STC1 - 8p21.2 [CytoView hg38]
Mapping of homologs : NCBISTC1 [Mapview hg19]  STC1 [Mapview hg38]
OMIM601185   
Gene and transcription
Genbank (Entrez)AK297734 AK309366 AK312589 BC029044 DQ890813
RefSeq transcript (Entrez)NM_003155
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)STC1
Cluster EST : UnigeneHs.25590 [ NCBI ]
CGAP (NCI)Hs.25590
Alternative Splicing GalleryENSG00000159167
Gene ExpressionSTC1 [ NCBI-GEO ]   STC1 [ EBI - ARRAY_EXPRESS ]   STC1 [ SEEK ]   STC1 [ MEM ]
Gene Expression Viewer (FireBrowse)STC1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6781
GTEX Portal (Tissue expression)STC1
Protein : pattern, domain, 3D structure
UniProt/SwissProtP52823   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP52823  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP52823
Splice isoforms : SwissVarP52823
PhosPhoSitePlusP52823
Domains : Interpro (EBI)Stanniocalcin   
Domain families : Pfam (Sanger)Stanniocalcin (PF03298)   
Domain families : Pfam (NCBI)pfam03298   
Conserved Domain (NCBI)STC1
DMDM Disease mutations6781
Blocks (Seattle)STC1
SuperfamilyP52823
Human Protein AtlasENSG00000159167
Peptide AtlasP52823
HPRD03115
IPIIPI00005564   IPI00984145   
Protein Interaction databases
DIP (DOE-UCLA)P52823
IntAct (EBI)P52823
FunCoupENSG00000159167
BioGRIDSTC1
STRING (EMBL)STC1
ZODIACSTC1
Ontologies - Pathways
QuickGOP52823
Ontology : AmiGOossification  endothelial cell morphogenesis  growth plate cartilage axis specification  hormone activity  extracellular space  nucleus  cytoplasm  cellular calcium ion homeostasis  embryo implantation  negative regulation of endothelial cell migration  apical plasma membrane  negative regulation of cell migration  response to vitamin D  chondrocyte proliferation  regulation of anion transport  decidualization  negative regulation of calcium ion transport  bone development  cellular response to cAMP  cellular response to glucocorticoid stimulus  cellular response to hypoxia  regulation of cardiac muscle cell contraction  positive regulation of calcium ion import  negative regulation of renal phosphate excretion  
Ontology : EGO-EBIossification  endothelial cell morphogenesis  growth plate cartilage axis specification  hormone activity  extracellular space  nucleus  cytoplasm  cellular calcium ion homeostasis  embryo implantation  negative regulation of endothelial cell migration  apical plasma membrane  negative regulation of cell migration  response to vitamin D  chondrocyte proliferation  regulation of anion transport  decidualization  negative regulation of calcium ion transport  bone development  cellular response to cAMP  cellular response to glucocorticoid stimulus  cellular response to hypoxia  regulation of cardiac muscle cell contraction  positive regulation of calcium ion import  negative regulation of renal phosphate excretion  
NDEx NetworkSTC1
Atlas of Cancer Signalling NetworkSTC1
Wikipedia pathwaysSTC1
Orthology - Evolution
OrthoDB6781
GeneTree (enSembl)ENSG00000159167
Phylogenetic Trees/Animal Genes : TreeFamSTC1
HOVERGENP52823
HOGENOMP52823
Homologs : HomoloGeneSTC1
Homology/Alignments : Family Browser (UCSC)STC1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSTC1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)STC1
dbVarSTC1
ClinVarSTC1
1000_GenomesSTC1 
Exome Variant ServerSTC1
ExAC (Exome Aggregation Consortium)STC1 (select the gene name)
Genetic variants : HAPMAP6781
Genomic Variants (DGV)STC1 [DGVbeta]
DECIPHERSTC1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSTC1 
Mutations
ICGC Data PortalSTC1 
TCGA Data PortalSTC1 
Broad Tumor PortalSTC1
OASIS PortalSTC1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSTC1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSTC1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch STC1
DgiDB (Drug Gene Interaction Database)STC1
DoCM (Curated mutations)STC1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)STC1 (select a term)
intoGenSTC1
Cancer3DSTC1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM601185   
Orphanet
MedgenSTC1
Genetic Testing Registry STC1
NextProtP52823 [Medical]
TSGene6781
GENETestsSTC1
Target ValidationSTC1
Huge Navigator STC1 [HugePedia]
snp3D : Map Gene to Disease6781
BioCentury BCIQSTC1
ClinGenSTC1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6781
Chemical/Pharm GKB GenePA36190
Clinical trialSTC1
Miscellaneous
canSAR (ICR)STC1 (select the gene name)
Probes
Litterature
PubMed85 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSTC1
EVEXSTC1
GoPubMedSTC1
iHOPSTC1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 17:15:57 CEST 2017

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