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STEAP1B (STEAP family member 1B)

Identity

Other alias-
HGNC (Hugo) STEAP1B
LocusID (NCBI) 256227
Atlas_Id 54991
Location 7p15.3  [Link to chromosome band 7p15]
Location_base_pair Starts at 22438419 and ends at 22500282 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
GRB10 (7p12.1) / STEAP1B (7p15.3)RAPGEF5 (7p15.3) / STEAP1B (7p15.3)GRB10 7p12.1 / STEAP1B 7p15.3
RAPGEF5 7p15.3 / STEAP1B 7p15.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)STEAP1B   41907
Cards
Entrez_Gene (NCBI)STEAP1B  256227  STEAP family member 1B
Aliases
GeneCards (Weizmann)STEAP1B
Ensembl hg19 (Hinxton)ENSG00000105889 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000105889 [Gene_View]  chr7:22438419-22500282 [Contig_View]  STEAP1B [Vega]
ICGC DataPortalENSG00000105889
TCGA cBioPortalSTEAP1B
AceView (NCBI)STEAP1B
Genatlas (Paris)STEAP1B
WikiGenes256227
SOURCE (Princeton)STEAP1B
Genetics Home Reference (NIH)STEAP1B
Genomic and cartography
GoldenPath hg38 (UCSC)STEAP1B  -     chr7:22438419-22500282 -  7p15.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)STEAP1B  -     7p15.3   [Description]    (hg19-Feb_2009)
EnsemblSTEAP1B - 7p15.3 [CytoView hg19]  STEAP1B - 7p15.3 [CytoView hg38]
Mapping of homologs : NCBISTEAP1B [Mapview hg19]  STEAP1B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK308991 BC066301
RefSeq transcript (Entrez)NM_001164460 NM_207342
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)STEAP1B
Cluster EST : UnigeneHs.729825 [ NCBI ]
CGAP (NCI)Hs.729825
Alternative Splicing GalleryENSG00000105889
Gene ExpressionSTEAP1B [ NCBI-GEO ]   STEAP1B [ EBI - ARRAY_EXPRESS ]   STEAP1B [ SEEK ]   STEAP1B [ MEM ]
Gene Expression Viewer (FireBrowse)STEAP1B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)256227
GTEX Portal (Tissue expression)STEAP1B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6NZ63   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6NZ63  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6NZ63
Splice isoforms : SwissVarQ6NZ63
PhosPhoSitePlusQ6NZ63
Domains : Interpro (EBI)Fe3_Rdtase_TM_dom   
Domain families : Pfam (Sanger)Ferric_reduct (PF01794)   
Domain families : Pfam (NCBI)pfam01794   
Conserved Domain (NCBI)STEAP1B
DMDM Disease mutations256227
Blocks (Seattle)STEAP1B
SuperfamilyQ6NZ63
Human Protein AtlasENSG00000105889
Peptide AtlasQ6NZ63
IPIIPI00888794   IPI00894148   IPI00916450   IPI00943946   
Protein Interaction databases
DIP (DOE-UCLA)Q6NZ63
IntAct (EBI)Q6NZ63
FunCoupENSG00000105889
BioGRIDSTEAP1B
STRING (EMBL)STEAP1B
ZODIACSTEAP1B
Ontologies - Pathways
QuickGOQ6NZ63
Ontology : AmiGOendosome  integral component of plasma membrane  cupric reductase activity  copper ion import  ferric-chelate reductase (NADPH) activity  
Ontology : EGO-EBIendosome  integral component of plasma membrane  cupric reductase activity  copper ion import  ferric-chelate reductase (NADPH) activity  
NDEx NetworkSTEAP1B
Atlas of Cancer Signalling NetworkSTEAP1B
Wikipedia pathwaysSTEAP1B
Orthology - Evolution
OrthoDB256227
GeneTree (enSembl)ENSG00000105889
Phylogenetic Trees/Animal Genes : TreeFamSTEAP1B
HOVERGENQ6NZ63
HOGENOMQ6NZ63
Homologs : HomoloGeneSTEAP1B
Homology/Alignments : Family Browser (UCSC)STEAP1B
Gene fusions - Rearrangements
Fusion : MitelmanGRB10/STEAP1B [7p12.1/7p15.3]  [t(7;7)(p12;p15)]  
Fusion : MitelmanRAPGEF5/STEAP1B [7p15.3/7p15.3]  [t(7;7)(p15;p15)]  
Fusion: TCGAGRB10 7p12.1 STEAP1B 7p15.3 BLCA
Fusion: TCGARAPGEF5 7p15.3 STEAP1B 7p15.3 BRCA
Fusion Cancer (Beijing)RAPGEF5 [7p15.3]  -  STEAP1B [7p15.3]  [FUSC000217]
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSTEAP1B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)STEAP1B
dbVarSTEAP1B
ClinVarSTEAP1B
1000_GenomesSTEAP1B 
Exome Variant ServerSTEAP1B
ExAC (Exome Aggregation Consortium)STEAP1B (select the gene name)
Genetic variants : HAPMAP256227
Genomic Variants (DGV)STEAP1B [DGVbeta]
DECIPHERSTEAP1B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSTEAP1B 
Mutations
ICGC Data PortalSTEAP1B 
TCGA Data PortalSTEAP1B 
Broad Tumor PortalSTEAP1B
OASIS PortalSTEAP1B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSTEAP1B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSTEAP1B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch STEAP1B
DgiDB (Drug Gene Interaction Database)STEAP1B
DoCM (Curated mutations)STEAP1B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)STEAP1B (select a term)
intoGenSTEAP1B
Cancer3DSTEAP1B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSTEAP1B
Genetic Testing Registry STEAP1B
NextProtQ6NZ63 [Medical]
TSGene256227
GENETestsSTEAP1B
Target ValidationSTEAP1B
Huge Navigator STEAP1B [HugePedia]
snp3D : Map Gene to Disease256227
BioCentury BCIQSTEAP1B
ClinGenSTEAP1B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD256227
Chemical/Pharm GKB GenePA166049073
Clinical trialSTEAP1B
Miscellaneous
canSAR (ICR)STEAP1B (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSTEAP1B
EVEXSTEAP1B
GoPubMedSTEAP1B
iHOPSTEAP1B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:57:52 CEST 2017

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